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Author |
Haruta, N.; Kitagawa, T. |
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Title |
Time-resolved UV resonance Raman investigation of protein folding using a rapid mixer: characterization of kinetic folding intermediates of apomyoglobin |
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Journal Article |
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Year |
2002 |
Publication |
Biochemistry |
Abbreviated Journal |
Biochemistry |
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Volume |
41 |
Issue |
21 |
Pages |
6595-6604 |
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Keywords  |
Animals; Apoproteins/*chemistry; Circular Dichroism; Holoenzymes/chemistry; Horses; Hydrochloric Acid/chemistry; Hydrogen-Ion Concentration; Imidazoles/chemistry; Kinetics; Models, Molecular; Myoglobin/*chemistry; Peptide Fragments/chemistry; *Protein Folding; Protein Structure, Secondary; Spectrum Analysis, Raman/*methods; Tryptophan/*chemistry; Ultraviolet Rays; Whales |
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Abstract |
The 244-nm excited transient UV resonance Raman spectra are observed for the refolding intermediates of horse apomyoglobin (h-apoMb) with a newly constructed mixed flow cell system, and the results are interpreted on the basis of the spectra observed for the equilibrium acid unfolding of the same protein. The dead time of mixing, which was determined with the appearance of UV Raman bands of imidazolium upon mixing of imidazole with acid, was 150 micros under the flow rate that was adopted. The pH-jump experiments of h-apoMb from pH 2.2 to 5.6 conducted with this device demonstrated the presence of three folding intermediates. On the basis of the analysis of W3 and W7 bands of Trp7 and Trp14, the first intermediate, formed before 250 micros, involved incorporation of Trp14 into the alpha-helix from a random coil. The frequency shift of the W3 band of Trp14 observed for this process was reproduced with a model peptide of the A helix when it forms the alpha-helix. In the second intermediate, formed around 1 ms after the start of refolding, the surroundings of both Trp7 and Trp14 were significantly hydrophobic, suggesting the formation of the hydrophobic core. In the third intermediate appearing around 3 ms, the hydrophobicity was relaxed to the same level as that of the pH 4 equilibrium intermediate, which was investigated in detail with the stationary state technique. The change from the third intermediate to the native state needs more time than 40 ms, while the appearance of the native spectrum after the mixing of the same solutions was confirmed separately. |
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School of Mathematical and Physical Sciences, The Graduate University for Advanced Studies, Myodaiji, Okazaki 444-8585, Japan |
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0006-2960 |
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PMID:12022863 |
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Equine Behaviour @ team @ |
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3785 |
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Author |
Zentall, T.R.; Galizio, M.; Critchfied, T.S. |
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Title |
Categorization, concept learning, and behavior analysis: an introduction |
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Journal Article |
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Year |
2002 |
Publication |
Journal of the experimental analysis of behavior |
Abbreviated Journal |
J Exp Anal Behav |
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Volume |
78 |
Issue |
3 |
Pages |
237-248 |
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Keywords |
Animals; Association Learning; *Concept Formation; *Discrimination Learning; Humans; Language |
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Abstract |
Categorization and concept learning encompass some of the most important aspects of behavior, but historically they have not been central topics in the experimental analysis of behavior. To introduce this special issue of the Journal of the Experimental Analysis of Behavior (JEAB), we define key terms; distinguish between the study of concepts and the study of concept learning; describe three types of concept learning characterized by the stimulus classes they yield; and briefly identify several other themes (e.g., quantitative modeling and ties to language) that appear in the literature. As the special issue demonstrates, a surprising amount and diversity of work is being conducted that either represents a behavior-analytic perspective or can inform or constructively challenge this perspective. |
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Department of Psychology, University of Kentucky, Lexington 40506, USA. zentall@pop.uky.edu |
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0022-5002 |
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PMID:12507002 |
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refbase @ user @ |
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236 |
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Fremouw, T.; Herbranson, W.T.; Shimp, C.P. |
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Title |
Dynamic shifts of pigeon local/global attention |
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Journal Article |
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Year |
2002 |
Publication |
Animal Cognition |
Abbreviated Journal |
Anim. Cogn. |
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Volume |
5 |
Issue |
4 |
Pages |
233-243 |
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Keywords |
Animals; Attention/*physiology; *Behavior, Animal; Columbidae/*physiology; Male; Reaction Time; Visual Perception/*physiology |
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It has previously been shown that pigeons can shift attention between parts and wholes of complex stimuli composed of larger, “global” characters constructed from smaller, “local” characters. The base-rate procedure used biased target level within any condition at either the local or global level; targets were more likely at one level than at the other. Biasing of target level in this manner demonstrated shifts of local/global attention over a time span consisting of several days with a fixed base rate. Experiment 1 examined the possibility that pigeons can shift attention between local and global levels of perceptual analysis in seconds rather than days. The experiment used priming cues the color of which predicted on a trial-by-trial basis targets at different perceptual levels. The results confirmed that pigeons, like humans, can display highly dynamic stimulus-driven shifts of local/global attention. Experiment 2 changed spatial relations between features of priming cues and features of targets within a task otherwise similar to that used in experiment 1. It was predicted that this change in cues might affect asymmetry but not the occurrence of a priming effect. A priming effect was again obtained, thereby providing generality to the claim that pigeons can learn that trial-by-trial primes predict targets at different levels of perceptual analysis. Pigeons can display perceptual, stimulus-driven priming of a highly dynamic nature. |
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Department of Psychology, University of California-Berkeley, Berkeley, CA 94720-1650, USA |
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1435-9448 |
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PMID:12461601 |
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Equine Behaviour @ team @ |
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2589 |
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Author |
Shettleworth, S.J.; Westwood, R.P. |
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Title |
Divided attention, memory, and spatial discrimination in food-storing and nonstoring birds, black-capped chickadees (Poecile atricapilla) and dark-eyed juncos (Junco hyemalis) |
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Journal Article |
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Year |
2002 |
Publication |
Journal of experimental psychology. Animal behavior processes |
Abbreviated Journal |
J Exp Psychol Anim Behav Process |
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Volume |
28 |
Issue |
3 |
Pages |
227-241 |
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Keywords |
Animals; Attention/*physiology; Behavior, Animal/physiology; Birds; *Discrimination (Psychology); *Food Habits; Memory/*physiology; Space Perception/*physiology; Spatial Behavior/*physiology |
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Food-storing birds, black-capped chickadees (Poecile atricapilla), and nonstoring birds, dark-eyed juncos (Junco hyemalis), matched color or location on a touch screen. Both species showed a divided attention effect for color but not for location (Experiment 1). Chickadees performed better on location than on color with retention intervals up to 40 s, but juncos did not (Experiment 2). Increasing sample-distractor distance improved performance similarly in both species. Multidimensional scaling revealed that both use a Euclidean metric of spatial similarity (Experiment 3). When choosing between the location and color of a remembered item, food storers choose location more than do nonstorers. These results explain this effect by differences in memory for location relative to color, not division of attention or spatial discrimination ability. |
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Department of Psychology, University of Toronto, 100 Saint George Street, Toronto, Ontario M5S 3G3, Canada. shettle@psych.utoronto.ca |
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0097-7403 |
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PMID:12136700 |
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no |
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Call Number |
refbase @ user @ |
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370 |
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Author |
Akins, C.K.; Klein, E.D.; Zentall, T.R. |
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Title |
Imitative learning in Japanese quail (Coturnix japonica) using the bidirectional control procedure |
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Journal Article |
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Year |
2002 |
Publication |
Animal learning & behavior |
Abbreviated Journal |
Anim Learn Behav |
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30 |
Issue |
3 |
Pages |
275-281 |
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Keywords |
Animals; Attention; Behavior, Animal; Coturnix; *Discrimination Learning; *Imitative Behavior; Male; Smell |
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In the bidirectional control procedure, observers are exposed to a conspecific demonstrator responding to a manipulandum in one of two directions (e.g., left vs. right). This procedure controls for socially mediated effects (the mere presence of a conspecific) and stimulus enhancement (attention drawn to a manipulandum by its movement), and it has the added advantage of being symmetrical (the two different responses are similar in topography). Imitative learning is demonstrated when the observers make the response in the direction that they observed it being made. Recently, however, it has been suggested that when such evidence is found with a predominantly olfactory animal, such as the rat, it may result artifactually from odor cues left on one side of the manipulandum by the demonstrator. In the present experiment, we found that Japanese quail, for which odor cues are not likely to play a role, also showed significant correspondence between the direction in which the demonstrator and the observer push a screen to gain access to reward. Furthermore, control quail that observed the screen move, when the movement of the screen was not produced by the demonstrator, did not show similar correspondence between the direction of screen movement observed and that performed by the observer. Thus, with the appropriate control, the bidirectional procedure appears to be useful for studying imitation in avian species. |
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University of Kentucky, Lexington, Kentucky 40506-0044, USA |
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0090-4996 |
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PMID:12391793 |
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no |
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refbase @ user @ |
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239 |
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Author |
Brazas, M.L.; Shimizu, T. |
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Title |
Significance of visual cues in choice behavior in the female zebra finch (Taeniopygia guttata castanotis) |
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Journal Article |
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Year |
2002 |
Publication |
Animal Cognition |
Abbreviated Journal |
Anim. Cogn. |
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Volume |
5 |
Issue |
2 |
Pages |
91-95 |
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Keywords |
Animals; Auditory Perception; Female; Male; *Sexual Behavior, Animal; Social Behavior; *Songbirds; *Visual Perception; Vocalization, Animal |
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Abstract |
Female zebra finches show a preference for male zebra finches over heterospecific males based solely on the auditory cues of males, such as songs. The present study was designed to investigate whether females show a similar preference for male zebra finches based solely on visual cues. Using a Y-maze apparatus, social preference of female zebra finches was studied between male zebra finches and male Bengalese finches in three experiments. In experiment 1, where female zebra finches could see and hear live male zebra finches and male Bengalese finches, the females preferred to associate with the male zebra finches. In experiment 2, using a sound-attenuated experimental apparatus, subjects could see, but not hear, male zebra finches and male Bengalese finches. The subjects did not show a significant preference for associating with zebra finches. In experiment 3, as in experiment 2, females could see live male zebra finches and male Bengalese finches in the sound-attenuated chambers. However, in experiment 3, the subjects also heard prerecorded auditory cues (i.e., songs and calls) of male zebra finches, which were presented simultaneously in both arms of the maze. Although the females could not use the auditory cues to identify the location of the male zebra finches, they preferred to associate with the male zebra finches rather than the male Bengalese finches. These results suggest that visual cues alone were effective in initiating choice behaviors by females and that auditory cues facilitate such visually based choice behaviors. |
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Department of Psychology, University of South Florida, PCD4118G, 4202 East Fowler Avenue, Tampa, FL 33620, USA |
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1435-9448 |
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PMID:12150041 |
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Equine Behaviour @ team @ |
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2603 |
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Author |
Powers, P.; Harrison, A. |
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Title |
Effects of the rider on the linear kinematics of jumping horses |
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Journal Article |
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Year |
2002 |
Publication |
Sports Biomechanics / International Society of Biomechanics in Sports |
Abbreviated Journal |
Sports Biomech |
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1 |
Issue |
2 |
Pages |
135-146 |
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Animals; Behavior, Animal/*physiology; Biomechanics; Communication; Exertion/*physiology; Gait/*physiology; Horses/*physiology; Humans; Locomotion/*physiology; Posture/*physiology; Task Performance and Analysis; Video Recording; Weight-Bearing/*physiology |
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This study examined the effects of the rider on the linear projectile kinematics of show-jumping horses. SVHS video recordings (50 Hz) of eight horses jumping a vertical fence 1 m high were used for the study. Horses jumped the fence under two conditions: loose (no rider or tack) and ridden. Recordings were digitised using Peak Motus. After digitising the sequences, each rider's digitised data were removed from the ridden horse data so that three conditions were examined: loose, ridden (including the rider's data) and riderless (rider's data removed). Repeated measures ANOVA revealed significant differences between ridden and loose conditions for CG height at take-off (p < 0.001), CG distance to the fence at take-off (p = 0.001), maximum CG during the suspension phase (p < 0.001), CG position over the centre of the fence (p < 0.001), CG height at landing (p < 0.001), and vertical velocity at take-off (p < 0.001). The results indicated that the rider's effect on jumping horses was primarily due to behavioural changes in the horses motion (resulting from the rider's instruction), rather than inertial effects (due to the positioning of the rider on the horse). These findings have implications for the coaching of riders and horses. |
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Department of PE and Sports Sciences, University of Limerick, Limerick, Ireland |
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1476-3141 |
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PMID:14658371 |
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1904 |
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Jones, J.E.; Antoniadis, E.; Shettleworth, S.J.; Kamil, A.C. |
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Title |
A comparative study of geometric rule learning by nutcrackers (Nucifraga columbiana), pigeons (Columba livia), and jackdaws (Corvus monedula) |
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Journal Article |
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Year |
2002 |
Publication |
Journal of comparative psychology (Washington, D.C. : 1983) |
Abbreviated Journal |
J Comp Psychol |
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Volume |
116 |
Issue |
4 |
Pages |
350-356 |
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Animals; Behavior, Animal/physiology; Birds; Feeding Behavior/physiology; Learning/*physiology; *Mathematics; Random Allocation; Spatial Behavior/*physiology |
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Abstract |
Three avian species, a seed-caching corvid (Clark's nutcrackers; Nucifraga columbiana), a non-seed-caching corvid (jackdaws; Corvus monedula), and a non-seed-caching columbid (pigeons; Columba livia), were tested for ability to learn to find a goal halfway between 2 landmarks when distance between the landmarks varied during training. All 3 species learned, but jackdaws took much longer than either pigeons or nutcrackers. The nutcrackers searched more accurately than either pigeons or jackdaws. Both nutcrackers and pigeons showed good transfer to novel landmark arrays in which interlandmark distances were novel, but inconclusive results were obtained from jackdaws. Species differences in this spatial task appear quantitative rather than qualitative and are associated with differences in natural history rather than phylogeny. |
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School of Biological Sciences, University of Nebraska-Lincoln, 68588-0118, USA |
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0735-7036 |
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PMID:12539930 |
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refbase @ user @ |
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369 |
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Author |
Call, J. |
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Title |
A fish-eye lens for comparative studies: broadening the scope of animal cognition |
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Journal Article |
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Year |
2002 |
Publication |
Animal Cognition |
Abbreviated Journal |
Anim. Cogn. |
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Volume |
5 |
Issue |
1 |
Pages |
15-16 |
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Animals; Behavior, Animal/physiology; Cognition/*physiology; Fishes/*physiology; Species Specificity |
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Abstract |
? is the article no longer available? |
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call@eva.mpg.de |
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1435-9448 |
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PMID:11957396 |
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Equine Behaviour @ team @ |
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2616 |
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Author |
Dorrance, B.R.; Zentall, T.R. |
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Title |
Imitation of conditional discriminations in pigeons (Columba livia) |
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Journal Article |
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Year |
2002 |
Publication |
Journal of comparative psychology (Washington, D.C. : 1983) |
Abbreviated Journal |
J Comp Psychol |
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Volume |
116 |
Issue |
3 |
Pages |
277-285 |
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Animals; Behavior, Animal/physiology; Columbidae; Conditioning (Psychology)/*physiology; Discrimination Learning/*physiology; Habituation, Psychophysiologic; *Imitative Behavior; Light; Reinforcement (Psychology) |
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In the present experiments, the 2-action method was used to determine whether pigeons could learn to imitate a conditional discrimination. Demonstrator pigeons (Columba livia) stepped on a treadle in the presence of 1 light and pecked at the treadle in the presence of another light. Demonstration did not seem to affect acquisition of the conditional discrimination (Experiment 1) but did facilitate its reversal of the conditional discrimination (Experiments 2 and 3). The results suggest that pigeons are not only able to learn a specific behavior by observing another pigeon, but they can also learn under which circumstances to perform that behavior. The results have implications for proposed mechanisms of imitation in animals. |
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Department of Psychology, Augustana College, Rock Island, Illinois 61201, USA. psdorrance@augustana.edu |
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0735-7036 |
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PMID:12234078 |
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refbase @ user @ |
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240 |
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