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Hagen, S.J.; Eaton, W.A. |
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Title |
Two-state expansion and collapse of a polypeptide |
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2000 |
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Journal of Molecular Biology |
Abbreviated Journal |
J Mol Biol |
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301 |
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4 |
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1019-1027 |
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Animals; Computer Simulation; Cytochrome c Group/*chemistry/*metabolism; Horses; Kinetics; Lasers; Models, Chemical; Peptides/*chemistry/*metabolism; Protein Conformation; Protein Denaturation; *Protein Folding; Spectrometry, Fluorescence; Temperature; Thermodynamics |
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The initial phase of folding for many proteins is presumed to be the collapse of the polypeptide chain from expanded to compact, but still denatured, conformations. Theory and simulations suggest that this collapse may be a two-state transition, characterized by barrier-crossing kinetics, while the collapse of homopolymers is continuous and multi-phasic. We have used a laser temperature-jump with fluorescence spectroscopy to measure the complete time-course of the collapse of denatured cytochrome c with nanosecond time resolution. We find the process to be exponential in time and thermally activated, with an apparent activation energy approximately 9 k(B)T (after correction for solvent viscosity). These results indicate that polypeptide collapse is kinetically a two-state transition. Because of the observed free energy barrier, the time scale of polypeptide collapse is dramatically slower than is predicted by Langevin models for homopolymer collapse. |
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Laboratory of Chemical Physics, NIDDK, National Institutes of Health, Building 5, Bethesda, MD, 20892-0520, USA |
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0022-2836 |
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PMID:10966803 |
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Equine Behaviour @ team @ |
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3790 |
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Sárová, R.; Spinka, M.; Panamá, J.L.A.; Simecek, P. |
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Graded leadership by dominant animals in a herd of female beef cattle on pasture |
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2010 |
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Animal Behaviour. |
Abbreviated Journal |
Anim. Behav. |
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79 |
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5 |
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1037-1045 |
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Bos taurus; cattle; dominance; foraging; Gps; group movement; leadership |
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The role of dominant individuals in leading groups of animals is not yet well understood. We investigated whether dominant beef cows, Bos taurus, have more influence on herd movement on pasture than more subordinate cows. A herd of 15 Gasconne cows was observed for a 3-week period between dawn and dusk. The positions of all adult cows were recorded with GPS collars at 1 min intervals and the behaviour of each cow was recorded in 5 min scans. The dominance hierarchy was recorded by ad libitum sampling. Through cluster analysis of the recorded data, we distinguished three herd behaviour patterns: resting, foraging and travelling. Dominant cows were closer to the front of the herd during both travelling and foraging. During travelling, more dominant cows also had more direct trajectories and were more aligned both with their nearest neighbours and with the whole herd. During foraging, the trajectories of dominant cows were shorter than those of subordinate cows. The results indicate that foraging and short-distance travelling movements by female beef cattle are not led by any particular individual but rather are influenced by a graded type of leadership; that is, the more dominant a cow is, the stronger the influence it may have on the movements of the herd. |
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Equine Behaviour @ team @ |
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5271 |
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Knopff, K.; Pavelka, M. |
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Feeding Competition and Group Size in Alouatta pigra |
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2006 |
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International Journal of Primatology |
Abbreviated Journal |
Int. J. Primatol. |
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27 |
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4 |
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1059-1078 |
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Alouatta pigra – ecological constraints – group size – infanticide – social constraints |
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Researchers consider group size in primates to be determined by complex relationships among numerous ecological forces. Antipredator benefits and better resource defense are the primary pressures for large groups. Conversely, intragroup limited food availability, can result in greater intragroup feeding competition and individual energy expenditure in larger groups, creating energetic advantages for individuals in small groups and placing an upper limit group size. However, the extent to which food availability constrains group size remains unclear for many species, including black howlers (Alouatta pigra), which ubiquitously live in small social groups (≤10 individuals). We studied the relationship between group size and 2 key indices of feeding competition-day journey length and activity budgets in 3 groups of wild Alouatta pigra at a hurricane-damaged site in Belize, Central America. We controlled for differences in food availability between home ranges (food tree density) and compared both indicators of feeding competition directly with temporal variation in food availability for each group. Our results show no consistent association between resource availability, group size, and either index of competition, indicating that feeding competition does not limit group size at the site i.e., that larger groups can form without increased costs of feeding competition. The results support the search for other explanations, possibly social ones, for small group size in the primates, and we conclude with suggestions and evidence for such alternative explanations. |
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refbase @ user @ |
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808 |
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Lusseau, D.; Conradt, L. |
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The emergence of unshared consensus decisions in bottlenose dolphins |
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Journal Article |
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2009 |
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Behavioral Ecology and Sociobiology |
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Behav. Ecol. Sociobiol. |
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63 |
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7 |
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1067-1077 |
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Behavioral ecology – Decision-making process – Bottlenose dolphin – Group living |
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Abstract Unshared consensus decision-making processes, in which one or a small number of individuals make the decision for the rest of a group, are rarely documented. However, this mechanism can be beneficial for all group members when one individual has greater knowledge about the benefits of the decision than other group members. Such decisions are reached during certain activity shifts within the population of bottlenose dolphins residing in Doubtful Sound, New Zealand. Behavioral signals are performed by one individual and seem to precipitate shifts in the behavior of the entire group: males perform side flops and initiate traveling bouts while females perform upside-down lobtails and terminate traveling bouts. However, these signals are not observed at all activity shifts. We find that, while side flops were performed by males that have greater knowledge than other male group members, this was not the case for females performing upside-down lobtails. The reason for this could have been that a generally high knowledge about the optimal timing of travel terminations rendered it less important which individual female made the decision. |
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Equine Behaviour @ team @ |
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5109 |
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Author |
Massen, J.; Sterck, E.; de Vos, H. |
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Title |
Close social associations in animals and humans: functions and mechanisms of friendship |
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2010 |
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Behaviour |
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147 |
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11 |
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1379 |
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Both humans and group-living animals associate and behave affiliatively more with some individuals than others. Human friendship has long been acknowledged, and recently scientists studying animal behaviour have started using the term friendship for close social associates in animals. Yet, while biologists describe friends as social tools to enhance fitness, social scientists describe human friendship as unconditional. We investigate whether these different descriptions reflect true differences in human friendship and animal close social associations or are a by-product of different research approaches: namely social scientists focussing on proximate and biologists on ultimate explanations. We first stress the importance of similar measures to determine close social associations, thereafter examine their ultimate benefits and proximate motivations, and discuss the latest findings on the central-neural regulation of social bonds. We conclude that both human friendship and animal close social associations are ultimately beneficial. On the proximate level, motivations for friendship in humans and for close social associations in animals are not necessarily based on benefits and are often unconditional. Moreover, humans share with many animals a similar physiological basis of sociality. Therefore, biologists and social scientist describe the same phenomenon, and the use of the term friendship for animals seems justified. |
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Both humans and group-living animals associate and behave affiliatively more with some individuals than others. Human friendship has long been acknowledged, and recently scientists studying animal behaviour have started using the term friendship for close social associates in animals. Yet, while biologists describe friends as social tools to enhance fitness, social scientists describe human friendship as unconditional. We investigate whether these different descriptions reflect true differences in human friendship and animal close social associations or are a by-product of different research approaches: namely social scientists focussing on proximate and biologists on ultimate explanations. We first stress the importance of similar measures to determine close social associations, thereafter examine their ultimate benefits and proximate motivations, and discuss the latest findings on the central-neural regulation of social bonds. We conclude that both human friendship and animal close social associations are ultimately beneficial. On the proximate level, motivations for friendship in humans and for close social associations in animals are not necessarily based on benefits and are often unconditional. Moreover, humans share with many animals a similar physiological basis of sociality. Therefore, biologists and social scientist describe the same phenomenon, and the use of the term friendship for animals seems justified. |
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Equine Behaviour @ team @ |
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5813 |
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Boogert, N.J.; Reader, S.M.; Hoppitt, W.; Laland, K.N. |
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The origin and spread of innovations in starlings |
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Journal Article |
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Year |
2008 |
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Animal Behaviour |
Abbreviated Journal |
Anim. Behav. |
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75 |
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4 |
Pages |
1509-1518 |
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diffusion dynamics; dominance; foraging; group; innovation; neophobia; social learning; social network; starling; Sturnus vulgaris |
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There are numerous reports of novel learned behaviour patterns in animal populations, yet the factors influencing the invention and spread of these innovations remain poorly understood. Here we investigated to what extent the pattern of spread of innovations in captive groups of starlings, Sturnus vulgaris, could be predicted by knowledge of individual and social group variables, including association patterns, social rank orders, measures of neophobia and asocial learning performance. We presented small groups of starlings with a series of novel extractive foraging tasks and recorded the latency for each bird to contact and solve each task, as well as the orders of contacting and solving. We then explored which variables best predicted the observed diffusion patterns. Object neophobia and social rank measures characterized who was the first of the group to contact the novel foraging tasks, and the subsequent spread of contacting tasks was associated with latency to feed in a novel environment. Asocial learning performance, measured in isolation, predicted who was the first solver of the novel foraging tasks in each group. Association patterns did not predict the spread of solving. Contact latency and solving duration were negatively correlated, consistent with social learning underlying the spread of solving. Our findings indicate that we can improve our understanding of the diffusion dynamics of innovations in animal groups by investigating group-dependent and individual variables in combination. We introduce novel methods for exploring predictors of the origin and spread of behavioural innovations that could be widely applied. |
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0003-3472 |
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Equine Behaviour @ team @ |
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6036 |
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Meunier, H.; Leca, J.B.; Deneubourg, J.L.; Petit, O. |
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Group movement decisions in capuchin monkeys: the utility of an experimental study and a mathematical model to explore the relationship between individual and collective behaviours |
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2006 |
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Behaviour |
Abbreviated Journal |
Behaviour |
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143 |
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1511-1527 |
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animal society – collective decision-making – primates – group movement – mathematical modeling |
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In primate groups, collective movements are typically described as processes dependent on leadership mechanisms. However, in some species, decision-making includes negotiations and distributed leadership. These facts suggest that simple underlying processes may explain certain decision mechanisms during collective movements. To study such processes, we have designed experiments on white-faced capuchin monkeys (Cebus capucinus) during which we provoked collective movements involving a binary choice. These experiments enabled us to analyse the spatial decisions of individuals in the group. We found that the underlying process includes anonymous mimetism, which means that each individual may influence all members of the group. To support this result, we created a mathematical model issued from our experimental data. A totally anonymous model does not fit perfectly with our experimental distribution. A more individualised model, which takes into account the specific behaviour of social peripheral individuals, revealed the validity of the mimetism hypothesis. Even though white-faced capuchins have complex cognitive abilities, a coexistence of anonymous and social mechanisms appears to influence their choice of direction during collective movements. The present approach may offer vital insights into the relationships between individual behaviours and their emergent collective acts. |
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2066 |
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Ridge, J.A.; Baldwin, R.L.; Labhardt, A.M. |
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Title |
Nature of the fast and slow refolding reactions of iron(III) cytochrome c |
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Journal Article |
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Year |
1981 |
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Biochemistry |
Abbreviated Journal |
Biochemistry |
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20 |
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6 |
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1622-1630 |
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Animals; Ascorbic Acid; *Cytochrome c Group; Guanidines; Horses; Kinetics; Oxidation-Reduction; Protein Conformation; Spectrum Analysis |
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The fast and slow refolding reactions of iron(III) cytochrome c (Fe(III) cyt c), previously studied by Ikai et al. (Ikai, A., Fish, W. W., & Tanford, C. (1973) J. Mol. Biol. 73, 165--184), have been reinvestigated. The fast reaction has the major amplitude (78%) and is 100-fold faster than the slow reaction in these conditions (pH 7.2, 25 degrees C, 1.75 M guanidine hydrochloride). We show here that native cyt c is the product formed in the fast reaction as well as in the slow reaction. Two probes have been used to test for formation of native cyt c. absorbance in the 695-nm band and rate of reduction of by L-ascorbate. Different unfolded species (UF, US) give rise to the fast and slow refolding reactions, as shown both by refolding assays at different times after unfolding (“double-jump” experiments) and by the formation of native cyt c in each of the fast and slow refolding reactions. Thus the fast refolding reaction is UF leads to N and the slow refolding reaction is Us leads to N, where N is native cyt c, and there is a US in equilibrium UF equilibrium in unfolded cyt c. The results are consistent with the UF in equilibrium US reaction being proline isomerization, but this has not yet been tested in detail. Folding intermediates have been detected in both reactions. In the UF leads to N reaction, the Soret absorbance change precedes the recovery of the native 695-nm band spectrum, showing that Soret absorbance monitors the formation of a folding intermediate. In the US leads to N reaction an ascorbate-reducible intermediate has been found at an early stage in folding and the Soret absorbance change occurs together with the change at 695 nm as N is formed in the final stage of folding. |
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0006-2960 |
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PMID:6261802 |
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Equine Behaviour @ team @ |
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3809 |
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King, A.J.; Douglas, C.M.S.; Huchard, E.; Isaac, N.J.B.; Cowlishaw, G. |
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Title |
Dominance and affiliation mediate despotism in a social primate |
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Journal Article |
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2008 |
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Current Biology : CB |
Abbreviated Journal |
Curr Biol |
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18 |
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23 |
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1833-1838 |
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Animals; *Authoritarianism; Behavior, Animal/*physiology; Cooperative Behavior; *Decision Making; Feeding Behavior; Female; *Group Processes; Male; Papio ursinus/*psychology; *Social Dominance |
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Group-living animals routinely have to reach a consensus decision and choose between mutually exclusive actions in order to coordinate their activities and benefit from sociality. Theoretical models predict “democratic” rather than “despotic” decisions to be widespread in social vertebrates, because they result in lower “consensus costs”-the costs of an individual foregoing its optimal action to comply with the decision-for the group as a whole. Yet, quantification of consensus costs is entirely lacking, and empirical observations provide strong support for the occurrence of both democratic and despotic decisions in nature. We conducted a foraging experiment on a wild social primate (chacma baboons, Papio ursinus) in order to gain new insights into despotic group decision making. The results show that group foraging decisions were consistently led by the individual who acquired the greatest benefits from those decisions, namely the dominant male. Subordinate group members followed the leader despite considerable consensus costs. Follower behavior was mediated by social ties to the leader, and where these ties were weaker, group fission was more likely to occur. Our findings highlight the importance of leader incentives and social relationships in group decision-making processes and the emergence of despotism. |
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Institute of Zoology, Zoological Society of London, Regent's Park, London, NW1 4RY, UK. andrew.king@ioz.ac.uk |
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0960-9822 |
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PMID:19026539 |
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Equine Behaviour @ team @ |
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5124 |
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Author |
Saigo, S. |
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A transient spin-state change during alkaline isomerization of ferricytochrome c |
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1981 |
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Journal of Biochemistry |
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J Biochem (Tokyo) |
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89 |
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6 |
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1977-1980 |
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Animals; *Cytochrome c Group; Horses; Hydrogen-Ion Concentration; Isomerism; Kinetics; Myocardium/enzymology; Oxidation-Reduction; Spectrophotometry |
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Kinetic difference spectra during the alkaline isomerization of ferricytochrome c were obtained by the pH-jump method in the range of 540 to 655 nm. The spectrum of the transient intermediate, which appears during the course of the isomerization, was reproduced from the spectra. The intermediate showed an intense absorption band at 600 nm, indicating that it is a high spin or mixed spin species. This is in contrast to the stable neutral and alkaline forms which are low spin species. The transient spin-state change during the isomerization was also observed upon rapid oxidation of ferrocytochrome c at alkaline pH. |
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0021-924X |
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PMID:6270075 |
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Equine Behaviour @ team @ |
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3808 |
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