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Pichardo, M. (2000). Valsequillo biostratigraphy. III: Equid ecospecies in Paleoindian sites. Anthropol Anz, 58(3), 275–298.
Abstract: Greater precision in North American Pleistocene equid taxonomy makes it now possible to exploit the ubiquitous horse remains in Paleoindian sites as ecological index-fossils. The horses of Central Mexico and the Southern Plains can be sorted by tooth size alone, except for two rare large horses of the Southern Plains. The species endemic to these grasslands and south to Central Mexico are Equus pacificus (large), E. conversidens (small), E. francisci (smallest). The Southern Plains were also occupied by a specialized grazer E. excelsus (Burnet and Sandia caves) and E. occidentalis (Dry and Sandia caves). West of the Rocky Mountains E. occidentalis was dominant. East of the Mississippi River two woodland species are found: E. fraternus and E. littoralis.
Keywords: Animals; *Ecology; Horses/*classification; Mexico; *Paleodontology; Species Specificity
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La Riviere, J. W. (1969). Ecology of yeasts in the kefir grain. Antonie Van Leeuwenhoek, 35, Suppl:D15–6.
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Muscatello, G., Anderson, G. A., Gilkerson, J. R., & Browning, G. F. (2006). Associations between the ecology of virulent Rhodococcus equi and the epidemiology of R. equi pneumonia on Australian thoroughbred farms. Appl Environ Microbiol, 72(9), 6152–6160.
Abstract: The ecology of virulent strains of Rhodococcus equi on horse farms is likely to influence the prevalence and severity of R. equi pneumonia in foals. This study examined the association between the ecology of virulent R. equi and the epidemiology of R. equi pneumonia by collecting air and soil samples over two breeding seasons (28 farm-year combinations) on Thoroughbred breeding farms with different reported prevalences of R. equi pneumonia. Colony blotting and DNA hybridization were used to detect and measure concentrations of virulent R. equi. The prevalence of R. equi pneumonia was associated with the airborne burden of virulent R. equi (both the concentration and the proportion of R. equi bacteria that were virulent) but was not associated with the burden of virulent R. equi in the soil. Univariable screening and multivariable model building were used to evaluate the effect of environmental and management factors on virulent R. equi burdens. Lower soil moisture concentrations and lower pasture heights were significantly associated with elevated airborne concentrations of virulent R. equi, as were the holding pens and lanes, which typically were sandy, dry, and devoid of pasture cover. Few variables appeared to influence concentrations of virulent R. equi in soil. Acidic soil conditions may have contributed to an elevated proportion of virulent strains within the R. equi population. Environmental management strategies that aim to reduce the level of exposure of susceptible foals to airborne virulent R. equi are most likely to reduce the impact of R. equi pneumonia on endemically affected farms.
Keywords: Actinomycetales Infections/epidemiology/microbiology/*veterinary; Air Microbiology; Animal Husbandry; Animals; Animals, Newborn; Australia/epidemiology; Colony Count, Microbial; DNA, Bacterial/genetics; Ecosystem; Horse Diseases/epidemiology/*microbiology; Horses; Pneumonia, Bacterial/epidemiology/microbiology/*veterinary; Rhodococcus equi/genetics/isolation & purification/*pathogenicity; Soil Microbiology; Virulence
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Waiblinger, S., Boivin, X., Pedersen, V., Tosi, M. - V., Janczak, A. M., Visser, E. K., et al. (2006). Assessing the human-animal relationship in farmed species: A critical review. Appl. Anim. Behav. Sci., 101(3-4), 185–242.
Abstract: The present paper focuses on six main issues. First, we briefly explain why an increased understanding of the human-animal relationship (HAR) is an essential component of any strategy intended to improve the welfare of farmed animals and their stockpersons. Second, we list the main internal and external factors that can influence the nature of the relationship and the interactions between human beings and farm animals. Third, we argue that the numerous tests that have been used to assess the HAR fall into three main categories (stationary human, moving human, handling/restraint), according to the degree of human involvement. Fourth, the requirements that any test of HAR must fulfil before it can be considered effective, and the ways in which the tests can be validated are discussed. Fifth, the various types of test procedures that have been used to assess the HAR in a range of farmed species are reviewed and critically discussed. Finally, some research perspectives that merit further attention are shown. The present review embraces a range of farmed animals. Our primary reasons for including a particular species were: whether or not general interest has been expressed in its welfare and its relationship with humans, whether relevant literature was available, and whether it is farmed in at least some European countries. Therefore, we include large and small ruminants (cattle, sheep, goats), pigs, poultry (chickens), fur animals (foxes, mink) and horses. Although horses are primarily used for sport, leisure or therapy they are farmed as draught, food or breeding animals in many countries. Literature on the HAR in other species was relatively scarce so they receive no further mention here.
Keywords: Human-animal relationships; Farm animals; Tests; Assessment; Welfare
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Hoff, M. P., Powell, D. M., Lukas, K. E., & Maple, T. L. (1997). Individual and social behavior of lowland gorillas in outdoor exhibits compared with indoor holding areas. Appl. Anim. Behav. Sci., 54(4), 359–370.
Abstract: The behavior of nine lowland gorillas (Gorilla gorilla gorilla) living in three social groups at Zoo Atlanta was compared in an indoor holding area versus an outdoor exhibit. Focal animal data were collected for each animal during 15 min observation sessions, alternating between indoors and outdoors. A variety of solitary and social behaviors differed in the two conditions. All individual and social behaviors that showed a difference, except eating, occurred more indoors than outdoors. These included aggressive displays, reclining, self manipulation, and social examination of others. Additionally, the gorillas spent more time closer together in the indoor condition. A variety of other behaviors measured did not change between the two environments. There was a clear effect on behavior of the different housing conditions in which the gorillas were kept. It is suggested that the differences in aggressive behavior may be related to environmental complexity. It is further suggested that zoos should be aware that differences in behavior reported by caretaking staff, researchers and visitors may be a reflection of the differing environmental circumstances in which the animals are observed.
Keywords: Behavior; Agonistic behavior; Spatial distribution; Primates; Social behavior; Housing; Zoo animals; Gorilla
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Piggins, D., & Phillips, C. J. C. (1998). Awareness in domesticated animals--concepts and definitions. Appl. Anim. Behav. Sci., 57(3-4), 181–200.
Abstract: Humans will probably never experience the awareness of another species, but adopting a broad concept of awareness leads to the conclusion that other species have some awareness. The existence of a more complex mind in humans, compared with other species, leads some to suggest that awareness only exists in humans. We postulate that humans possess a significantly increased level of awareness, facilitated in particular by the acquisition of language, but that generally animals possess a level of awareness that is appropriate to their needs. Categories of awareness can be devised by identifying levels, such as are used in the identification of the conscious state in humans, or by ranking states of awareness in order of complexity. A scheme is proposed that combines these two approaches, which is considered suitable for use with domesticated animals. The advantages of identifying awareness as being sensation-, perception- or cognition-based are discussed, as well as the possibility of a scheme based on the degree and site of CNS processing. Finally, the acquisition of awareness by learning and inheritance is considered, and it is argued that in variable environments, animals will evolve increased awareness, whereas in very stable environments the energetic cost of awareness will encourage the evolution of less aware animals.
Keywords: Complex mind; Awareness; Humans; Domesticated animals; Conscious state
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Broom, D. M. (2010). Cognitive ability and awareness in domestic animals and decisions about obligations to animals. Appl. Anim. Behav. Sci., 126(1-2), 1–11.
Abstract: Observation of behaviour, especially social behaviour, and experimental studies of learning and brain function give us information about the complexity of concepts that animals have. In order to learn to obtain a resource or carry out an action, domestic animals may: relate stimuli such as human words to the reward, perform sequences of actions including navigation or detours, discriminate amongst other individuals, copy the actions of other individuals, distinguish between individuals who do or do not have information, or communicate so as to cause humans or other animals to carry out actions. Some parrots, that are accustomed to humans but not domesticated, can use words to have specific meanings. In some cases, stimuli, individuals or actions are remembered for days, weeks or years. Events likely to occur in the future may be predicted and changes over time taken into account. Scientific evidence for the needs of animals depends, in part, on studies assessing motivational strength whose methodology depends on the cognitive ability of the animals. Recognition and learning may be associated with changes in physiology, behaviour and positive or negative feelings. Learning and other complex behaviour can result in affect and affect can alter cognition. The demonstration of cognitive bias gives indications about affect and welfare but should be interpreted in the light of other information. All of the information mentioned so far helps to provide evidence about sentience and the level of awareness. The term sentience implies a range of abilities, not just the capacity to have some feelings. The reluctance of scientists to attribute complex abilities and feelings to non-humans has slowed the development of this area of science. Most people consider that they have obligations to some animals. However, they might protect animals because they consider that an animal has an intrinsic value, or because of their concern for its welfare. In social species, there has been selection promoting moral systems that might result in behaviours such as attempts to avoid harm to others, collaboration and other altruistic behaviour. An evaluation of such behaviour may provide one of the criteria for decisions about whether or not to protect animals of a particular species. Other criteria may be: whether or not the animal is known as an individual, similarity to humans, level of awareness, extent of feelings, being large, being rare, being useful or having aesthetic quality for humans. Cognitive ability should also be considered when designing methods of enriching the environments of captive animals.
Keywords: Cognition; Awareness; Self-awareness; Feelings; Emotions; Cognitive bias; Sentience; Welfare; Domestic animals
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Price, E. O. (1999). Behavioral development in animals undergoing domestication. App Anim Behav Sci, 65(3), 245–271.
Abstract: The process of domestication involves adaptation, usually to a captive environment. Domestication is attained by some combination of genetic changes occurring over generations and developmental mechanisms (e.g., physical maturation, learning) triggered by recurring environmental events or management practices in captivity that influence specific biological traits. The transition from free-living to captive status is often accompanied by changes in availability and/or accessibility of shelter, space, food and water, and by changes in predation and the social environment. These changes set the stage for the development of the domestic phenotype. Behavioral development in animals undergoing domestication is characterized by changes in the quantitative rather than qualitative nature of responses. The hypothesized loss of certain behavior patterns under domestication can usually be explained by the heightening of response thresholds. Increases in response frequency accompanying domestication can often be explained by atypical rates of exposure to certain forms of perceptual and locomotor stimulation. Genetic changes influencing the development of the domestic phenotype result from inbreeding, genetic drift, artificial selection, natural selection in captivity, and relaxed selection. Experiential contributions to the domestic phenotype include the presence or absence of key stimuli, changes in intraspecific aggressive interactions and interactions with humans. Man's role as a buffer between the animal and its environment is also believed to have an important effect on the development of the domestic phenotype. The domestication process has frequently reduced the sensitivity of animals to changes in their environment, perhaps the single-most important change accompanying domestication. It has also resulted in modified rates of behavioral and physical development. Interest in breeding animals in captivity for release in nature has flourished in recent decades. The capacity of domestic animals to survive and reproduce in nature may depend on the extent to which the gene pool of the population has been altered during the domestication process and flexibility in behavioral development. “Natural” gene pools should be protected when breeding wild animals in captivity for the purpose of reestablishing free-living natural populations. In some cases, captive-reared animals must be conditioned to live in nature prior to their release.
Keywords: Domestication; Domestic animals; Captivity; Behavioral development; Feral; Reintroduction
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Balakrishnan, G., Hu, Y., & Spiro, T. G. (2006). Temperature-jump apparatus with Raman detection based on a solid-state tunable (1.80-2.05 microm) kHz optical parametric oscillator laser. Appl Spectrosc, 60(4), 347–351.
Abstract: The operating characteristics of a pulsed (10 ns) tunable near-infrared (NIR) laser source are described for temperature-jump (T-jump) applications. A Q-switched Nd:YLF laser (approximately 10 ns pulses) with a 1 kHz repetition rate is used to pump a potassium titanyl arsenate (KTA) crystal-based optical parametric oscillator (OPO), producing approximately 1 mJ NIR pulses that are tunable (1.80-2.05 microm) across the 1.9 microm vibrational overtone band of water. This T-jump source has been coupled to a deep ultraviolet (UV) probe laser for Raman studies of protein dynamics. T-jumps of up to 30 degrees C, as measured via the O-H stretching Raman band of water, are readily achieved. Application to cytochrome c unfolding is demonstrated.
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Bykov, S., Lednev, I., Ianoul, A., Mikhonin, A., Munro, C., & Asher, S. A. (2005). Steady-state and transient ultraviolet resonance Raman spectrometer for the 193-270 nm spectral region. Appl Spectrosc, 59(12), 1541–1552.
Abstract: We describe a state-of-the-art tunable ultraviolet (UV) Raman spectrometer for the 193-270 nm spectral region. This instrument allows for steady-state and transient UV Raman measurements. We utilize a 5 kHz Ti-sapphire continuously tunable laser (approximately 20 ns pulse width) between 193 nm and 240 nm for steady-state measurements. For transient Raman measurements we utilize one Coherent Infinity YAG laser to generate nanosecond infrared (IR) pump laser pulses to generate a temperature jump (T-jump) and a second Coherent Infinity YAG laser that is frequency tripled and Raman shifted into the deep UV (204 nm) for transient UV Raman excitation. Numerous other UV excitation frequencies can be utilized for selective excitation of chromophoric groups for transient Raman measurements. We constructed a subtractive dispersion double monochromator to minimize stray light. We utilize a new charge-coupled device (CCD) camera that responds efficiently to UV light, as opposed to the previous CCD and photodiode detectors, which required intensifiers for detecting UV light. For the T-jump measurements we use a second camera to simultaneously acquire the Raman spectra of the water stretching bands (2500-4000 cm(-1)) whose band-shape and frequency report the sample temperature.
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