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	Author	Burke, C.; Rashman, M.; Wich, S.; Symons, A.; Theron, C.; Longmore, S.
	Title	Optimizing observing strategies for monitoring animals using drone-mounted thermal infrared cameras			Type	Journal Article
	Year	2019	Publication	International Journal of Remote Sensing	Abbreviated Journal	International Journal of Remote Sensing
	Volume	40	Issue	2	Pages	439-467
	Keywords
	Abstract	ABSTRACTThe proliferation of relatively affordable off-the-shelf drones offers great opportunities for wildlife monitoring and conservation. Similarly the recent reduction in the cost of thermal infrared cameras also offers new promise in this field, as they have the advantage over conventional RGB cameras of being able to distinguish animals based on their body heat and being able to detect animals at night. However, the use of drone-mounted thermal infrared cameras comes with several technical challenges. In this article, we address some of these issues, namely thermal contrast problems due to heat from the ground, absorption and emission of thermal infrared radiation by the atmosphere, obscuration by vegetation, and optimizing the flying height of drones for a best balance between covering a large area and being able to accurately image and identify animals of interest. We demonstrate the application of these methods with a case study using field data and make the first ever detection of the critically endangered riverine rabbit (Bunolagus monticularis) in thermal infrared data. We provide a web-tool so that the community can easily apply these techniques to other studies (http://www.astro.ljmu.ac.uk/aricburk/uav_calc/).
	Address
	Corporate Author				Thesis
	Publisher	Taylor & Francis	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0143-1161	ISBN		Medium
	Area		Expedition		Conference
	Notes	doi: 10.1080/01431161.2018.1558372			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6528
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	Author	Irving-Pease, E.K.; Ryan, H.; Jamieson, A.; Dimopoulos, E.A.; Larson, G.; Frantz, L.A.F.
	Title	Paleogenomics of Animal Domestication			Type	Book Chapter
	Year	2019	Publication	Paleogenomics: Genome-Scale Analysis of Ancient DNA	Abbreviated Journal
	Volume		Issue		Pages	225-272
	Keywords
	Abstract	Starting with dogs, over 15,000 years ago, the domestication of animals has been central in the development of modern societies. Because of its importance for a range of disciplines – including archaeology, biology and the humanities – domestication has been studied extensively. This chapter reviews how the field of paleogenomics has revolutionised, and will continue to revolutionise, our understanding of animal domestication. We discuss how the recovery of ancient DNA from archaeological remains is allowing researchers to overcome inherent shortcomings arising from the analysis of modern DNA alone. In particular, we show how DNA, extracted from ancient substrates, has proven to be a crucial source of information to reconstruct the geographic and temporal origin of domestic species. We also discuss how ancient DNA is being used by geneticists and archaeologists to directly observe evolutionary changes linked to artificial and natural selection to generate a richer understanding of this fascinating process.
	Address
	Corporate Author				Thesis
	Publisher	Springer International Publishing	Place of Publication	Cham	Editor	Lindqvist, C.; Rajora, O.P.
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN	978-3-030-04753-5	Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	Equine Behaviour @ team @ Irving-Pease2019			Serial	6583
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	Author	Steinhoff-Wagner, J.
	Title	Coat Clipping of Horses: A Survey			Type	Journal Article
	Year	2019	Publication	Journal of Applied Animal Welfare Science	Abbreviated Journal	Journal of Applied Animal Welfare Science
	Volume	22	Issue	2	Pages	171-187
	Keywords	Equine, thermoregulation, shaving, winter pelage removal
	Abstract	Coat clipping is a common practice in sport horses; however, timing, purpose, technique, and clips vary widely, as do the management and feeding of a clipped horse. The aim of this study was to collect data regarding common clipping practices. A questionnaire was published online in Germany and contained 32 questions. Four hundred ninety-eight people answered at least one question, and 373 individuals (7% male, 93% female; ages 14–59 years) completed all the questions. Clipped horses were predominantly used as sport horses (68%), and they were either clipped immediately before or during the winter season (88%) or year-round (7%). The clipping date was scheduled according to hair length (52%), sweat amount (47%), and drying time (47%). Participants primarily used two clips: the hunter clip and the blanket clip, both without clipping the head (23% each). The majority of the clipped horses wore a blanket day and night (> 90%). Future studies with observations in the field are needed to support survey data in an effort to develop welfare recommendations for clipping practices utilized with horses.
	Address
	Corporate Author				Thesis
	Publisher	Routledge	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1088-8705	ISBN		Medium
	Area		Expedition		Conference
	Notes	doi: 10.1080/10888705.2018.1454319			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6613
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	Author	Broekhuis, F.; Madsen, E.K.; Keiwua, K.; Macdonald, D.W.
	Title	Using GPS collars to investigate the frequency and behavioural outcomes of intraspecific interactions among carnivores: A case study of male cheetahs in the Maasai Mara, Kenya			Type	Journal Article
	Year	2019	Publication	Plos One	Abbreviated Journal	Plos One
	Volume	14	Issue	4	Pages	e0213910
	Keywords
	Abstract	Intraspecific interactions between individuals or groups of individuals of the same species are an important component of population dynamics. Interactions can be static, such as spatial overlap, or dynamic based on the interactions of movements, and can be mediated through communication, such as the deployment of scent marks. Interactions and their behavioural outcomes can be difficult to determine, especially for species that live at low densities. With the use of GPS collars we quantify both static and dynamic interactions between male cheetahs (Acinonyx jubatus) and the behavioural outcomes. The 99% home-ranges of males overlapped significantly while there was little overlap of the 50% home-ranges. Despite this overlap, male cheetahs rarely came into close proximity of one another, possibly because presence was communicated through frequent visits to marking posts. The minimum distance between individuals in a dyad ranged from 89m to 196m but the average proximity between individuals ranged from 17,145 ± 6,865m to 26,367 ± 11,288m. Possible interactions took place more frequently at night than by day and occurred mostly in the 50% home-range of one individual of a dyad or where cores of both individuals overlapped. After a possible encounter male cheetahs stayed in close proximity to each other for up to 6 hours, which could be the result of a territory defence strategy or the presence of a receptive female. We believe that one of the encounters between a singleton and a 5-male coalition resulted in the death of the singleton. Our results give new insights into cheetah interactions, which could help our understanding of ecological processes such as disease transmission.
	Address
	Corporate Author				Thesis
	Publisher	Public Library of Science	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6562
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	Author	Krueger, K.; Esch, L.; Byrne, R.
	Title	Animal behaviour in a human world: A crowdsourcing study on horses that open door and gate mechanisms			Type	Journal Article
	Year	2019	Publication	Plos One	Abbreviated Journal	Plos One
	Volume	14	Issue	6	Pages	e0218954
	Keywords
	Abstract	Anecdotal reports of horses opening fastened doors and gates are an intriguing way of exploring the possible scope of horses' problem-solving capacities. The species' natural environment has no analogues of the mechanisms involved. Scientific studies on the topic are missing, because the rate of occurrence is too low for exploration under controlled conditions. Therefore, we compiled from lay persons case reports of horses opening closed doors and gates. Additionally, we collected video documentations at the internet platform YouTube, taking care to select raw data footage of unedited, clearly described and clearly visible cases of animals with no distinct signs of training or reduced welfare. The data included individuals opening 513 doors or gates on hinges, 49 sliding doors, and 33 barred doors and gateways; mechanisms included 260 cases of horizontal and 155 vertical bars, 43 twist locks, 42 door handles, 34 electric fence handles, 40 carabiners, and 2 locks with keys. Opening was usually for escape, but also for access to food or stable-mates, or out of curiosity or playfulness. While 56 percent of the horses opened a single mechanism at one location, 44 percent opened several types of mechanism (median = 2, min. = 1, max. = 5) at different locations (median = 2, min. = 1, max. = 4). The more complex the mechanism was, the more movements were applied, varying from median 2 for door handles to 10 for carabiners. Mechanisms requiring head- or lip-twisting needed more movements, with significant variation between individuals. 74 horses reported in the questionnaire had options for observing the behaviour in stable mates, 183 did not, which indicates that the latter learned to open doors and gates either individually or from observing humans. Experience favours opening efficiency; subjects which opened several door types applied fewer movements per lock than horses which opened only one door type. We failed to identify a level of complexity of door-fastening mechanism that was beyond the learning capacity of the horse to open. Thus, all devices in frequent use, even carabiners and electric fence handles, are potentially vulnerable to opening by horses, something which needs to be considered in relation to keeping horses safely.
	Address
	Corporate Author				Thesis
	Publisher	Public Library of Science	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6580
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	Author	Broekhuis, F.; Madsen, E.K.; Klaassen, B.
	Title	Predators and pastoralists: how anthropogenic pressures inside wildlife areas influence carnivore space use and movement behaviour			Type	Journal Article
	Year	2019	Publication	Animal Conservation	Abbreviated Journal	Anim Conserv
	Volume		Issue		Pages
	Keywords	cheetah; livestock; movement; human pressure; protected areas; space use
	Abstract	Abstract Across the globe, wildlife populations and their behaviours are negatively impacted by people. Protected areas are believed to be an antidote to increasing human pressures but even they are not immune to the impact of anthropogenic activities. Areas that have been set aside for the protection of wildlife therefore warrant more attention when investigating the impact of anthropogenic pressures on wildlife. We use cheetahs Acinonyx jubatus as a case study to explore how a large carnivore responds to anthropogenic pressures inside wildlife areas. Using GPS-collar data we investigate cheetah space use, both when moving and stationary, and movement parameters (speed and turn angles) in relation to human disturbance, distance to human settlement, livestock abundance and livestock site use inside wildlife areas. Space use was negatively influenced by human disturbance, resulting in habitat loss and fragmentation and potentially reducing landscape permeability between neighbouring wildlife areas. Cheetahs were also less likely to stop in areas where livestock numbers were high, but more likely to stop in areas that were frequently used by livestock. The latter could reflect that cheetahs are attracted to livestock however, cheetahs in the study area rarely predated on livestock. It is therefore more likely that areas that are frequently used by livestock attract wild herbivores, which in turn could influence cheetah space use. We did not find any effects of people and livestock on cheetahs? speed and turn angles which might be related to the resolution of the data. We found that cheetahs are sensitive to human pressures and we believe that they could be an indicator species for other large carnivores facing similar challenges. We suggest that further research is needed to determine the levels of anthropogenic pressures needed to maintain ecological integrity, especially inside wildlife areas.
	Address
	Corporate Author				Thesis
	Publisher	John Wiley & Sons, Ltd (10.1111)	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1367-9430	ISBN		Medium
	Area		Expedition		Conference
	Notes	doi: 10.1111/acv.12483			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6522
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	Author	Hofmeester, T.R.; Cromsigt, J.P.G.M.; Odden, J.; Andrén, H.; Kindberg, J.; Linnell, J.D.C.
	Title	Framing pictures: A conceptual framework to identify and correct for biases in detection probability of camera traps enabling multi-species comparison			Type	Journal Article
	Year	2019	Publication	Ecology and Evolution	Abbreviated Journal	Ecol Evol
	Volume		Issue		Pages
	Keywords	animal characteristics; detectability; environmental variables; mammal monitoring; reuse of data; trail camera
	Abstract	Abstract Obtaining reliable species observations is of great importance in animal ecology and wildlife conservation. An increasing number of studies use camera traps (CTs) to study wildlife communities, and an increasing effort is made to make better use and reuse of the large amounts of data that are produced. It is in these circumstances that it becomes paramount to correct for the species- and study-specific variation in imperfect detection within CTs. We reviewed the literature and used our own experience to compile a list of factors that affect CT detection of animals. We did this within a conceptual framework of six distinct scales separating out the influences of (a) animal characteristics, (b) CT specifications, (c) CT set-up protocols, and (d) environmental variables. We identified 40 factors that can potentially influence the detection of animals by CTs at these six scales. Many of these factors were related to only a few overarching parameters. Most of the animal characteristics scale with body mass and diet type, and most environmental characteristics differ with season or latitude such that remote sensing products like NDVI could be used as a proxy index to capture this variation. Factors that influence detection at the microsite and camera scales are probably the most important in determining CT detection of animals. The type of study and specific research question will determine which factors should be corrected. Corrections can be done by directly adjusting the CT metric of interest or by using covariates in a statistical framework. Our conceptual framework can be used to design better CT studies and help when analyzing CT data. Furthermore, it provides an overview of which factors should be reported in CT studies to make them repeatable, comparable, and their data reusable. This should greatly improve the possibilities for global scale analyses of (reused) CT data.
	Address
	Corporate Author				Thesis
	Publisher	John Wiley & Sons, Ltd	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	2045-7758	ISBN		Medium
	Area		Expedition		Conference
	Notes	doi: 10.1002/ece3.4878			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6518
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	Author	Reinhardt, I.; Kluth, G.; Nowak, C.; Szentiks, C.A.; Krone, O.; Ansorge, H.; Mueller, T.
	Title	Military training areas facilitate the recolonization of wolves in Germany			Type	Journal Article
	Year	2019	Publication	Conservation Letters	Abbreviated Journal	Conservation Letters
	Volume	12	Issue	3	Pages	e12635
	Keywords	Canis lupus; large carnivores; population growth; protected areas; recolonization
	Abstract	Abstract Wolves (Canis lupus) are currently showing a remarkable comeback in the highly fragmented cultural landscapes of Germany. We here show that wolf numbers increased exponentially between 2000 and 2015 with an annual increase of about 36%. We demonstrate that the first territories in each newly colonized region were established over long distances from the nearest known reproducing pack on active military training areas (MTAs). We show that MTAs, rather than protected areas, served as stepping-stones for the recolonization of Germany facilitating subsequent spreading of wolf territories in the surrounding landscape. We did not find any significant difference between MTAs and protected areas with regard to habitat. One possible reason for the importance of MTAs may be their lower anthropogenic mortality rates compared to protected and other areas. To our knowledge, this is the first documented case where MTAs facilitate the recolonization of an endangered species across large areas.
	Address
	Corporate Author				Thesis
	Publisher	John Wiley & Sons, Ltd	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1755-263x	ISBN		Medium
	Area		Expedition		Conference
	Notes	https://doi.org/10.1111/conl.12635			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6676
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	Author	Sigurjónsdóttir, H.; Haraldsson, H.
	Title	Significance of Group Composition for the Welfare of Pastured Horses			Type	Journal Article
	Year	2019	Publication	Animals	Abbreviated Journal	Animals
	Volume	9	Issue	14	Pages
	Keywords	horse welfare; aggression; allogrooming; pastured horses; Icelandic horse
	Abstract	We explore how herd composition and management factors correlate with frequencies of social interactions in horse groups. Since the welfare of horses correlates with low aggression levels and social contact opportunities, information of this kind is important. The data are a collection of records of social interactions of 426 Icelandic horses in 20 groups of at least eight horses. The complexities and limitations of the data prohibit useful statistical modelling so the results are presented descriptively. Interesting and informative patterns emerge which can be of use both in management and in future studies. Of special interest are the low levels of agonistic behaviours in breeding groups where one stallion was present. The horses were less agonistic when in groups with young foals and where group membership was stable. Unfamiliar yearlings in peer groups were especially aggressive. Allogrooming was most frequent in groups with relatively more young horses and in unstable and small groups. Interestingly, the horses allogroomed more if they had few preferred allogrooming partners. The findings show that composition (age/sex) and stability of groups are of great importance with respect to aggression levels and opportunities for establishing bonds.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title	Animals
	Series Volume	9	Series Issue	1	Edition
	ISSN	2076-2615	ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6510
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	Author	Palme, R.
	Title	Non-invasive measurement of glucocorticoids: Advances and problems			Type	Journal Article
	Year	2019	Publication	Physiology & Behavior	Abbreviated Journal	Physiol. Behav.
	Volume	199	Issue		Pages	229-243
	Keywords	Glucocorticoids; Non-invasive; Faecal cortisol/corticosterone metabolites; Immunoassays; Physiological/biological validation
	Abstract	Glucocorticoids (GCs; i.e. cortisol/corticosterone) are a central component of the stress response and thus their measurement is frequently used to evaluate the impact of stressful situations. Their metabolites from faeces of various animal species are more and more taken as a non-invasive aid to assess GC release and thus adrenocortical activity. The current literature review includes an extensive collection (1327 papers) and evaluation (see also Supplementary Tables) of the literature on faecal cortisol/corticosterone metabolite (FCM) analysis published to date. It aims at giving reference for researchers interested in implementing FCM analysis into their study or seeking to improve such methods by providing background knowledge on GC metabolism and excretion, conveying insights into methodological issues and stating caveats of FCM analysis and by highlighting prerequisites for and some examples of a successful application of such methods. Collecting faecal samples and analysing FCMs may appear simple and straightforward, but researchers have to select and apply methods correctly. They also need to be aware of the many pitfalls and potentially confounding factors and, last but not least, have to carefully interpret results. Applied properly, measurement of FCMs is a powerful non-invasive tool in a variety of research areas, such as (stress) biology, ethology, ecology, animal conservation and welfare, but also biomedicine.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0031-9384	ISBN		Medium
	Area		Expedition		Conference
	Notes	Palme2019_attachment.pdf			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6517
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