| Records |
| Author |
Uzawa, T.; Akiyama, S.; Kimura, T.; Takahashi, S.; Ishimori, K.; Morishima, I.; Fujisawa, T. |
| Title |
Collapse and search dynamics of apomyoglobin folding revealed by submillisecond observations of alpha-helical content and compactness |
Type |
Journal Article |
| Year |
2004 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
101 |
Issue |
5 |
Pages |
1171-1176 |
| Keywords |
Animals; Apoproteins/*chemistry; Circular Dichroism; Cytochromes c/chemistry; Horses; Myoglobin/*chemistry; *Protein Folding; *Protein Structure, Secondary; Scattering, Radiation |
| Abstract |
The characterization of protein folding dynamics in terms of secondary and tertiary structures is important in elucidating the features of intraprotein interactions that lead to specific folded structures. Apomyoglobin (apoMb), possessing seven helices termed A-E, G, and H in the native state, has a folding intermediate composed of the A, G, and H helices, whose formation in the submillisecond time domain has not been clearly characterized. In this study, we used a rapid-mixing device combined with circular dichroism and small-angle x-ray scattering to observe the submillisecond folding dynamics of apoMb in terms of helical content (f(H)) and radius of gyration (R(g)), respectively. The folding of apoMb from the acid-unfolded state at pH 2.2 was initiated by a pH jump to 6.0. A significant collapse, corresponding to approximately 50% of the overall change in R(g) from the unfolded to native conformation, was observed within 300 micros after the pH jump. The collapsed intermediate has a f(H) of 33% and a globular shape that involves >80% of all its atoms. Subsequently, a stepwise helix formation was detected, which was interpreted to be associated with a conformational search for the correct tertiary contacts. The characterized folding dynamics of apoMb indicates the importance of the initial collapse event, which is suggested to facilitate the subsequent conformational search and the helix formation leading to the native structure. |
Address  |
Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo, Kyoto 615-8510, Japan |
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English |
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0027-8424 |
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| Notes |
PMID:14711991 |
Approved |
no |
| Call Number |
Equine Behaviour @ team @ |
Serial |
3779 |
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| Author |
Hoy, R. |
| Title |
Animal awareness: The (un)binding of multisensory cues in decision making by animals |
Type |
Journal Article |
| Year |
2005 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
102 |
Issue |
7 |
Pages |
2267-2268 |
| Keywords |
Animals; Anura/physiology; *Awareness; *Behavior, Animal; Decision Making; Female; Male; Perception; Sensation |
| Abstract |
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| Address |
Department of Neurobiology and Behavior, 215 Mudd Hall, Cornell University, Ithaca, NY 14850, USA. rrh3@cornell.edu |
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English |
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0027-8424 |
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| Notes |
PMID:15703288 |
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no |
| Call Number |
Equine Behaviour @ team @ |
Serial |
2821 |
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| Author |
Dusek, J.A.; Eichenbaum, H. |
| Title |
The hippocampus and memory for orderly stimulus relations |
Type |
Journal Article |
| Year |
1997 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
94 |
Issue |
13 |
Pages |
7109-7114 |
| Keywords |
Animals; Attention; Discrimination (Psychology)/physiology; Hippocampus/anatomy & histology/*physiology; Male; Memory/*physiology; Rats |
| Abstract |
Human declarative memory involves a systematic organization of information that supports generalizations and inferences from acquired knowledge. This kind of memory depends on the hippocampal region in humans, but the extent to which animals also have declarative memory, and whether inferential expression of memory depends on the hippocampus in animals, remains a major challenge in cognitive neuroscience. To examine these issues, we used a test of transitive inference pioneered by Piaget to assess capacities for systematic organization of knowledge and logical inference in children. In our adaptation of the test, rats were trained on a set of four overlapping odor discrimination problems that could be encoded either separately or as a single representation of orderly relations among the odor stimuli. Normal rats learned the problems and demonstrated the relational memory organization through appropriate transitive inferences about items not presented together during training. By contrast, after disconnection of the hippocampus from either its cortical or subcortical pathway, rats succeeded in acquiring the separate discrimination problems but did not demonstrate transitive inference, indicating that they had failed to develop or could not inferentially express the orderly organization of the stimulus elements. These findings strongly support the view that the hippocampus mediates a general declarative memory capacity in animals, as it does in humans. |
| Address |
Department of Psychology, Boston University, 64 Cummington Street, Boston, MA 02215, USA |
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English |
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0027-8424 |
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| Notes |
PMID:9192700 |
Approved |
no |
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refbase @ user @ |
Serial |
607 |
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| Author |
Seyfarth, R.M.; Cheney, D.L. |
| Title |
What are big brains for? |
Type |
Journal Article |
| Year |
2002 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
99 |
Issue |
7 |
Pages |
4141-4142 |
| Keywords |
Animals; Brain/*anatomy & histology; *Intelligence; Learning; Primates/*anatomy & histology/*psychology; Social Behavior |
| Abstract |
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| Address |
Department of Psychology, University of Pennsylvania, Philadelphia, PA 19104, USA. seyfarth@psych.upenn.edu |
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English |
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0027-8424 |
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| Notes |
PMID:11929989 |
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no |
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refbase @ user @ |
Serial |
692 |
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| Author |
Chase, I.D.; Tovey, C.; Spangler-Martin, D.; Manfredonia, M. |
| Title |
Individual differences versus social dynamics in the formation of animal dominance hierarchies |
Type |
Journal Article |
| Year |
2002 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
99 |
Issue |
8 |
Pages |
5744-5749 |
| Keywords |
Animals; *Behavior, Animal; Fishes; Humans; *Social Behavior; *Social Dominance |
| Abstract |
Linear hierarchies, the classical pecking-order structures, are formed readily in both nature and the laboratory in a great range of species including humans. However, the probability of getting linear structures by chance alone is quite low. In this paper we investigate the two hypotheses that are proposed most often to explain linear hierarchies: they are predetermined by differences in the attributes of animals, or they are produced by the dynamics of social interaction, i.e., they are self-organizing. We evaluate these hypotheses using cichlid fish as model animals, and although differences in attributes play a significant part, we find that social interaction is necessary for high proportions of groups with linear hierarchies. Our results suggest that dominance hierarchy formation is a much richer and more complex phenomenon than previously thought, and we explore the implications of these results for evolutionary biology, the social sciences, and the use of animal models in understanding human social organization. |
| Address |
Department of Sociology, State University of New York, Stony Brook, NY 11794-4356, USA. Ichase@notes.cc.sunysb.edu |
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English |
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0027-8424 |
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| Notes |
PMID:11960030 |
Approved |
no |
| Call Number |
refbase @ user @ |
Serial |
442 |
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| Author |
Johnstone, R.A. |
| Title |
Eavesdropping and animal conflict |
Type |
Journal Article |
| Year |
2001 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
98 |
Issue |
16 |
Pages |
9177-9180 |
| Keywords |
*Aggression; Animals; *Behavior, Animal; *Conflict (Psychology); Models, Theoretical |
| Abstract |
Fights between pairs of animals frequently take place within a wider social context. The displays exchanged during conflict, and the outcome of an encounter, are often detectable by individuals who are not immediately involved. In at least some species, such bystanders are known to eavesdrop on contests between others, and to modify their behavior toward the contestants in response to the observed interaction. Here, I extend Maynard Smith's well known model of animal aggression, the Hawk-Dove game, to incorporate the possibility of eavesdroppers. I show that some eavesdropping is favored whenever the cost of losing an escalated fight exceeds the value of the contested resource, and that its equilibrium frequency is greatest when costs are relatively high. Eavesdropping reduces the risk of escalated conflict relative to that expected by chance, given the level of aggression in the population. However, it also promotes increased aggression, because it enhances the value of victory. The net result is that escalated conflicts are predicted to occur more frequently when eavesdropping is possible. |
| Address |
Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, United Kingdom. raj1003@hermes.cam.ac.uk |
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0027-8424 |
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| Notes |
PMID:11459936 |
Approved |
no |
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refbase @ user @ |
Serial |
497 |
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| Author |
Reader, S.M.; Laland, K.N. |
| Title |
Social intelligence, innovation, and enhanced brain size in primates |
Type |
Journal Article |
| Year |
2002 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
99 |
Issue |
7 |
Pages |
4436-4441 |
| Keywords |
Animals; Brain/*anatomy & histology; Evolution; *Intelligence; Learning; Primates/*anatomy & histology/*psychology; Social Behavior |
| Abstract |
Despite considerable current interest in the evolution of intelligence, the intuitively appealing notion that brain volume and “intelligence” are linked remains untested. Here, we use ecologically relevant measures of cognitive ability, the reported incidence of behavioral innovation, social learning, and tool use, to show that brain size and cognitive capacity are indeed correlated. A comparative analysis of 533 instances of innovation, 445 observations of social learning, and 607 episodes of tool use established that social learning, innovation, and tool use frequencies are positively correlated with species' relative and absolute “executive” brain volumes, after controlling for phylogeny and research effort. Moreover, innovation and social learning frequencies covary across species, in conflict with the view that there is an evolutionary tradeoff between reliance on individual experience and social cues. These findings provide an empirical link between behavioral innovation, social learning capacities, and brain size in mammals. The ability to learn from others, invent new behaviors, and use tools may have played pivotal roles in primate brain evolution. |
| Address |
Department of Zoology, University of Cambridge, High Street, Madingley, Cambridge CB3 8AA, United Kingdom |
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0027-8424 |
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| Notes |
PMID:11891325 |
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no |
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Serial |
2149 |
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| Author |
de Waal, F.B.M.; Dindo, M.; Freeman, C.A.; Hall, M.J. |
| Title |
The monkey in the mirror: hardly a stranger |
Type |
Journal Article |
| Year |
2005 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
102 |
Issue |
32 |
Pages |
11140-11147 |
| Keywords |
Analysis of Variance; Animals; Cebus/*physiology; *Discrimination (Psychology); Empathy; Female; Male; Observation; *Recognition (Psychology); *Self Concept; Sex Factors |
| Abstract |
It is widely assumed that monkeys see a stranger in the mirror, whereas apes and humans recognize themselves. In this study, we question the former assumption by using a detailed comparison of how monkeys respond to mirrors versus live individuals. Eight adult female and six adult male brown capuchin monkeys (Cebus apella) were exposed twice to three conditions: (i) a familiar same-sex partner, (ii) an unfamiliar same-sex partner, and (iii) a mirror. Females showed more eye contact and friendly behavior and fewer signs of anxiety in front of a mirror than they did when exposed to an unfamiliar partner. Males showed greater ambiguity, but they too reacted differently to mirrors and strangers. Discrimination between conditions was immediate, and blind coders were able to tell the difference between monkeys under the three conditions. Capuchins thus seem to recognize their reflection in the mirror as special, and they may not confuse it with an actual conspecific. Possibly, they reach a level of self-other distinction intermediate between seeing their mirror image as other and recognizing it as self. |
| Address |
Living Links Center, Emory University, Atlanta, GA 30322, USA. dewaal@emory.edu |
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0027-8424 |
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| Notes |
PMID:16055557 |
Approved |
no |
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refbase @ user @ |
Serial |
164 |
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| Author |
Plotnik, J.M.; de Waal, F.B.M.; Reiss, D. |
| Title |
Self-recognition in an Asian elephant |
Type |
Journal Article |
| Year |
2006 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
103 |
Issue |
45 |
Pages |
17053-17057 |
| Keywords |
Animals; Asia; *Behavior, Animal; Cognition; Elephants/*psychology; Female; Photic Stimulation |
| Abstract |
Considered an indicator of self-awareness, mirror self-recognition (MSR) has long seemed limited to humans and apes. In both phylogeny and human ontogeny, MSR is thought to correlate with higher forms of empathy and altruistic behavior. Apart from humans and apes, dolphins and elephants are also known for such capacities. After the recent discovery of MSR in dolphins (Tursiops truncatus), elephants thus were the next logical candidate species. We exposed three Asian elephants (Elephas maximus) to a large mirror to investigate their responses. Animals that possess MSR typically progress through four stages of behavior when facing a mirror: (i) social responses, (ii) physical inspection (e.g., looking behind the mirror), (iii) repetitive mirror-testing behavior, and (iv) realization of seeing themselves. Visible marks and invisible sham-marks were applied to the elephants' heads to test whether they would pass the litmus “mark test” for MSR in which an individual spontaneously uses a mirror to touch an otherwise imperceptible mark on its own body. Here, we report a successful MSR elephant study and report striking parallels in the progression of responses to mirrors among apes, dolphins, and elephants. These parallels suggest convergent cognitive evolution most likely related to complex sociality and cooperation. |
| Address |
Living Links, Yerkes National Primate Research Center, and Department of Psychology, Emory University, 532 North Kligo Circle, Atlanta, GA 30322, USA |
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English |
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0027-8424 |
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| Notes |
PMID:17075063 |
Approved |
no |
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refbase @ user @ |
Serial |
408 |
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| Author |
Mettke-Hofmann, C.; Gwinner, E. |
| Title |
Long-term memory for a life on the move |
Type |
Journal Article |
| Year |
2003 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
100 |
Issue |
10 |
Pages |
5863-5866 |
| Keywords |
Animals; Germany; Israel; Memory/*physiology; Models, Biological; Periodicity; Songbirds/*physiology |
| Abstract |
Evidence is accumulating that cognitive abilities are shaped by the specific ecological conditions to which animals are exposed. Long-distance migratory birds may provide a striking example of this. Field observations have shown that, at least in some species, a substantial proportion of individuals return to the same breeding, wintering, and stopover sites in successive years. This observation suggests that migrants have evolved special cognitive abilities that enable them to accomplish these feats. Here we show that memory of a particular feeding site persisted for at least 12 months in a long-distance migrant, whereas a closely related nonmigrant could remember such a site for only 2 weeks. Thus, it seems that the migratory lifestyle has influenced the learning and memorizing capacities of migratory birds. These results build a bridge between field observations suggesting special memorization feats of migratory birds and previous neuroanatomical results from the same two species indicating an increase in relative hippocampal size from the first to the second year of life in the migrant but not in the nonmigrant. |
| Address |
Max Planck Research Centre for Ornithology, Department of Biological Rhythms and Behaviour, Von-der-Tann-Strasse 7, 82346 Andechs, Germany. mettke-hofmann@erl.ornithol.mpg.de |
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0027-8424 |
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| Notes |
PMID:12719527 |
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no |
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refbase @ user @ |
Serial |
511 |
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