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Ruid, D. B., Paul, W. J., Roell, B. J., Wydeven, A. P., Willging, R. C., Jurewicz, R. L., et al. (2009). Wolf-Human Conflicts and Management in Minnesota, Wisconsin, and Michigan. In A. P. Wydeven, T. R. Van Deelen, & E. J. Heske (Eds.), Recovery of Gray Wolves in the Great Lakes Region of the United States: An Endangered Species Success Story (pp. 279–295). New York, NY: Springer New York.
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Irving-Pease, E. K., Ryan, H., Jamieson, A., Dimopoulos, E. A., Larson, G., & Frantz, L. A. F. (2019). Paleogenomics of Animal Domestication. In C. Lindqvist, & O. P. Rajora (Eds.), Paleogenomics: Genome-Scale Analysis of Ancient DNA (pp. 225–272). Cham: Springer International Publishing.
Abstract: Starting with dogs, over 15,000 years ago, the domestication of animals has been central in the development of modern societies. Because of its importance for a range of disciplines – including archaeology, biology and the humanities – domestication has been studied extensively. This chapter reviews how the field of paleogenomics has revolutionised, and will continue to revolutionise, our understanding of animal domestication. We discuss how the recovery of ancient DNA from archaeological remains is allowing researchers to overcome inherent shortcomings arising from the analysis of modern DNA alone. In particular, we show how DNA, extracted from ancient substrates, has proven to be a crucial source of information to reconstruct the geographic and temporal origin of domestic species. We also discuss how ancient DNA is being used by geneticists and archaeologists to directly observe evolutionary changes linked to artificial and natural selection to generate a richer understanding of this fascinating process.
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Hofmeester, T. R., Cromsigt, J. P. G. M., Odden, J., Andrén, H., Kindberg, J., & Linnell, J. D. C. (2019). Framing pictures: A conceptual framework to identify and correct for biases in detection probability of camera traps enabling multi-species comparison. Ecol Evol, .
Abstract: Abstract Obtaining reliable species observations is of great importance in animal ecology and wildlife conservation. An increasing number of studies use camera traps (CTs) to study wildlife communities, and an increasing effort is made to make better use and reuse of the large amounts of data that are produced. It is in these circumstances that it becomes paramount to correct for the species- and study-specific variation in imperfect detection within CTs. We reviewed the literature and used our own experience to compile a list of factors that affect CT detection of animals. We did this within a conceptual framework of six distinct scales separating out the influences of (a) animal characteristics, (b) CT specifications, (c) CT set-up protocols, and (d) environmental variables. We identified 40 factors that can potentially influence the detection of animals by CTs at these six scales. Many of these factors were related to only a few overarching parameters. Most of the animal characteristics scale with body mass and diet type, and most environmental characteristics differ with season or latitude such that remote sensing products like NDVI could be used as a proxy index to capture this variation. Factors that influence detection at the microsite and camera scales are probably the most important in determining CT detection of animals. The type of study and specific research question will determine which factors should be corrected. Corrections can be done by directly adjusting the CT metric of interest or by using covariates in a statistical framework. Our conceptual framework can be used to design better CT studies and help when analyzing CT data. Furthermore, it provides an overview of which factors should be reported in CT studies to make them repeatable, comparable, and their data reusable. This should greatly improve the possibilities for global scale analyses of (reused) CT data.
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Jansen, W. L., van Alphen, M., Berghout, M., Everts, H., & Beynen, A. C. (2001). An approach to assessment of the efficiency of dietary energy utilization by horses and ponies kept at riding schools. Vet Q, 23(4), 195–198.
Abstract: The ratio of calculated net energy intake (NEi) to calculate net energy requirement (NEr) might serve as an indicator of the efficiency of dietary energy utilization. The ratio was determined for 93 horses and ponies from 10 riding schools. For each animal with an assumed constant body weight, energy intake and energy requirements were assessed. On average, the estimated NEi was 14% greater than NEr. There was a significant, negative association between crude fibre intake and the NEi: NEr ratio. Earlier work indicated that extra fat intake may lead to over estimation of the calculated energy value of the ration due to changes in macronutrient digestibility. Dietary fat concentration was found to range from 32 to 52 g/kg dry matter (5 to 6 g/MJ net energy), but on the basis of digestibility trials this range in fat concentration is too small to significantly influence the NEi: NEr ratio. This study shows that assessment of the efficiency of dietary energy utilization under normal conditions, on the basis of the NEi: NEr ratio is fraught with uncertainty.
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Gesquiere, L. R., Learn, N. H., Simao, M. C. M., Onyango, P. O., Alberts, S. C., & Altmann, J. (2011). Life at the Top: Rank and Stress in Wild Male Baboons. Science, 333(6040), 357–360.
Abstract: In social hierarchies, dominant individuals experience reproductive and health benefits, but the costs of social dominance remain a topic of debate. Prevailing hypotheses predict that higher-ranking males experience higher testosterone and glucocorticoid (stress hormone) levels than lower-ranking males when hierarchies are unstable but not otherwise. In this long-term study of rank-related stress in a natural population of savannah baboons (Papio cynocephalus), high-ranking males had higher testosterone and lower glucocorticoid levels than other males, regardless of hierarchy stability. The singular exception was for the highest-ranking (alpha) males, who exhibited both high testosterone and high glucocorticoid levels. In particular, alpha males exhibited much higher stress hormone levels than second-ranking (beta) males, suggesting that being at the very top may be more costly than previously thought.
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Schmidt, M., & Lipson, H. (2009). Distilling Free-Form Natural Laws from Experimental Data. Science, 324(5923), 81–85.
Abstract: For centuries, scientists have attempted to identify and document analytical laws that underlie physical phenomena in nature. Despite the prevalence of computing power, the process of finding natural laws and their corresponding equations has resisted automation. A key challenge to finding analytic relations automatically is defining algorithmically what makes a correlation in observed data important and insightful. We propose a principle for the identification of nontriviality. We demonstrated this approach by automatically searching motion-tracking data captured from various physical systems, ranging from simple harmonic oscillators to chaotic double-pendula. Without any prior knowledge about physics, kinematics, or geometry, the algorithm discovered Hamiltonians, Lagrangians, and other laws of geometric and momentum conservation. The discovery rate accelerated as laws found for simpler systems were used to bootstrap explanations for more complex systems, gradually uncovering the “alphabet” used to describe those systems.
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Bücheler, T., & Sieg, J. H. (2011). Understanding Science 2.0: Crowdsourcing and Open Innovation in the Scientific Method. Proceedings of the 2nd European Future Technologies Conference and Exhibition 2011 (FET 11), 7, 327–329.
Abstract: The innovation process is currently undergoing significant change in many industries. The World Wide Web has created a virtual world of collective intelligence and helped large groups of people connect and collaborate in the innovation process [1]. Von Hippel [2], for instance, states that a large number of users of a given technology will come up with innovative ideas. This process, originating in business, is now also being observed in science. Discussions around “Citizen Science” [3] and “Science 2.0” [4] suggest the same effects are relevant for fundamental research practices. “Crowdsourcing” [5] and “Open Innovation” [6] as well as other names for those paradigms, like Peer Production, Wikinomics, Swarm Intelligence etc., have become buzzwords in recent years. However, serious academic research efforts have also been started in many disciplines. In essence, these buzzwords all describe a form of collective intelligence that is enabled by new technologies, particularly internet connectivity. The focus of most current research on this topic is in the for-profit domain, i.e. organizations willing (and able) to pay large sums to source innovation externally, for instance through innovation contests. Our research is testing the applicability of Crowdsourcing and some techniques from Open Innovation to the scientific method and basic science in a non-profit environment (e.g., a traditional research university). If the tools are found to be useful, this may significantly change how some research tasks are conducted: While large, apriori unknown crowds of “irrational agents” (i.e. humans) are used to support scientists (and teams thereof) in several research tasks through the internet, the usefulness and robustness of these interactions as well as scientifically important factors like quality and validity of research results are tested in a systematic manner. The research is highly interdisciplinary and is done in collaboration with scientists from sociology, psychology, management science, economics, computer science, and artificial intelligence. After a pre-study, extensive data collection has been conducted and the data is currently being analyzed. The paper presents ideas and hypotheses and opens the discussion for further input.
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Begall, S., Malkemper, E. P., Cervený, J., Nemec, P., & Burda, H. (2013). Magnetic alignment in mammals and other animals. Mamm. Biol., 78(1), 10–20.
Abstract: Magnetic alignment (MA) constitutes the simplest directional response to the geomagnetic field. In contrast to magnetic compass orientation, MA is not goal directed and represents a spontaneous, fixed directional response. Because animals tend to align their bodies along or perpendicular to the magnetic field lines, MA typically leads to bimodal or quadrimodal orientation, although there is also growing evidence for a fixed unimodal orientation not necessarily coinciding with the magnetic cardinal directions. MA has been demonstrated in diverse animals including insects, amphibians, fish, and mammals. Alignment can be expressed by animals during resting as well as on the move (e.g. while grazing, hunting, feeding, etc.). Here, we briefly survey characteristic features and classical examples of MA and review the current knowledge about the occurrence of MA in mammals. In addition, we summarize what is known about mechanisms underlying MA and discuss its prospective biological functions. Finally, we highlight some physiological effects of alignment along the magnetic field axes reported in humans. We argue that the phenomenon of MA adds a new paradigm that can be exploited for investigation of magnetoreception in mammals.
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Belock, B., Kaiser, L. J., Lavagnino, M., & Clayton, H. M. (2012). Comparison of pressure distribution under a conventional saddle and a treeless saddle at sitting trot. The Veterinary Journal, 193(1), 87–91.
Abstract: It can be a challenge to find a conventional saddle that is a good fit for both horse and rider. An increasing number of riders are purchasing treeless saddles because they are thought to fit a wider range of equine back shapes, but there is only limited research to support this theory. The objective of this study was to compare the total force and pressure distribution patterns on the horse’s back with conventional and treeless saddles. The experimental hypotheses were that the conventional saddle would distribute the force over a larger area with lower mean and maximal pressures than the treeless saddle. Eight horses were ridden by a single rider at sitting trot with conventional and treeless saddles. An electronic pressure mat measured total force, area of saddle contact, maximal pressure and area with mean pressure >11 kPa for 10 strides with each saddle. Univariate ANOVA (P < 0.05) was used to detect differences between saddles. Compared with the treeless saddle, the conventional saddle distributed the rider’s bodyweight over a larger area, had lower mean and maximal pressures and fewer sensors recording mean pressure >11 kPa. These findings suggested that the saddle tree was effective in distributing the weight of the saddle and rider over a larger area and in avoiding localized areas of force concentration.
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Clayton, H. M., Larson, B., Kaiser, L. A. J., & Lavagnino, M. (2011). Length and elasticity of side reins affect rein tension at trot. The Veterinary Journal, 188(3), 291–294.
Abstract: This study investigated the horse’s contribution to tension in the reins. The experimental hypotheses were that tension in side reins (1) increases biphasically in each trot stride, (2) changes inversely with rein length, and (3) changes with elasticity of the reins. Eight riding horses trotted in hand at consistent speed in a straight line wearing a bit and bridle and three types of side reins (inelastic, stiff elastic, compliant elastic) were evaluated in random order at long, neutral, and short lengths. Strain gauge transducers (240 Hz) measured minimal, maximal and mean rein tension, rate of loading and impulse. The effects of rein type and length were evaluated using ANOVA with Bonferroni post hoc tests. Rein tension oscillated in a regular pattern with a peak during each diagonal stance phase. Within each rein type, minimal, maximal and mean tensions were higher with shorter reins. At neutral or short lengths, minimal tension increased and maximal tension decreased with elasticity of the reins. Short, inelastic reins had the highest maximal tension and rate of loading. Since the tension variables respond differently to rein elasticity at different lengths, it is recommended that a set of variables representing different aspects of rein tension should be reported.
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