|
Irving-Pease, E. K., Ryan, H., Jamieson, A., Dimopoulos, E. A., Larson, G., & Frantz, L. A. F. (2019). Paleogenomics of Animal Domestication. In C. Lindqvist, & O. P. Rajora (Eds.), Paleogenomics: Genome-Scale Analysis of Ancient DNA (pp. 225–272). Cham: Springer International Publishing.
Abstract: Starting with dogs, over 15,000 years ago, the domestication of animals has been central in the development of modern societies. Because of its importance for a range of disciplines – including archaeology, biology and the humanities – domestication has been studied extensively. This chapter reviews how the field of paleogenomics has revolutionised, and will continue to revolutionise, our understanding of animal domestication. We discuss how the recovery of ancient DNA from archaeological remains is allowing researchers to overcome inherent shortcomings arising from the analysis of modern DNA alone. In particular, we show how DNA, extracted from ancient substrates, has proven to be a crucial source of information to reconstruct the geographic and temporal origin of domestic species. We also discuss how ancient DNA is being used by geneticists and archaeologists to directly observe evolutionary changes linked to artificial and natural selection to generate a richer understanding of this fascinating process.
|
|
|
Boyce, P. N., & McLoughlin, P. D. (2021). Ecological Interactions Involving Feral Horses and Predators: Review with Implications for Biodiversity Conservation. Jour. Wild. Mgmt., n/a(n/a).
Abstract: ABSTRACT For many ecosystems, feral horses are increasingly becoming an important if not dominant component of ungulate biomass and hence influence on community dynamics. Yet we still know little of how horses contribute to key ecological interactions including predator-prey and indirect competitive relationships at a community level. Notably, feral species like horses can exhibit life-history traits that differ from that of native (mainly artiodactyl) herbivore competitors. Artificial selection for traits like increased, early, or extended reproduction that have yet to be reversed by natural selection, coupled with naturally selected differences in anatomy and behavior, in addition to unique management objectives for horses compared to other species, means that the dynamics of feral horse populations are not likely to align with what might be expected of other large herbivores. Unexpected population dynamics and inherent biological asymmetries between native ungulates and feral horses may therefore influence the former via direct competition for shared resources and through enemy-mediated interactions like apparent competition. In several localities feral horses now co-exist with multiple native prey species, some of which are in decline or are species at risk. Compounding risks to native species from direct or indirect competitive exclusion by horses is the unique nature and socio-political context of feral horse management, which tends towards allowing horse populations to be limited largely by natural, density-dependent factors. We summarize the inherent asymmetries between feral horse biology and that of other ungulate prey species with consequences for conservation, focusing on predator-prey and emerging indirect interactions in multi-prey systems, and highlight future directions to address key knowledge gaps in our understanding of how feral horses may now be contributing to the (re)structuring of food webs. Observations of patterns of rapid growth and decline, and associated skews in sex ratios of feral horse populations, indicate a heightened potential for indirect interactions among large ungulate prey species, where there is a prevalence of feral horses as preferred prey, particularly where native prey are declining. In places like western North America, we expect predator-prey interactions involving feral horses to become an increasingly important factor in the conservation of wildlife. This applies not only to economically or culturally important game species but also at-risk species, both predators (e.g., wolves [Canis lupus], grizzly bears [Ursus arctos]) and prey (e.g., woodland caribou [Rangifer tarandus caribou]), necessitating an ecological understanding of the role of horses in natural environments that goes beyond that of population control. ? 2021 The Wildlife Society.
|
|
|
Hofmeester, T. R., Cromsigt, J. P. G. M., Odden, J., Andrén, H., Kindberg, J., & Linnell, J. D. C. (2019). Framing pictures: A conceptual framework to identify and correct for biases in detection probability of camera traps enabling multi-species comparison. Ecol Evol, .
Abstract: Abstract Obtaining reliable species observations is of great importance in animal ecology and wildlife conservation. An increasing number of studies use camera traps (CTs) to study wildlife communities, and an increasing effort is made to make better use and reuse of the large amounts of data that are produced. It is in these circumstances that it becomes paramount to correct for the species- and study-specific variation in imperfect detection within CTs. We reviewed the literature and used our own experience to compile a list of factors that affect CT detection of animals. We did this within a conceptual framework of six distinct scales separating out the influences of (a) animal characteristics, (b) CT specifications, (c) CT set-up protocols, and (d) environmental variables. We identified 40 factors that can potentially influence the detection of animals by CTs at these six scales. Many of these factors were related to only a few overarching parameters. Most of the animal characteristics scale with body mass and diet type, and most environmental characteristics differ with season or latitude such that remote sensing products like NDVI could be used as a proxy index to capture this variation. Factors that influence detection at the microsite and camera scales are probably the most important in determining CT detection of animals. The type of study and specific research question will determine which factors should be corrected. Corrections can be done by directly adjusting the CT metric of interest or by using covariates in a statistical framework. Our conceptual framework can be used to design better CT studies and help when analyzing CT data. Furthermore, it provides an overview of which factors should be reported in CT studies to make them repeatable, comparable, and their data reusable. This should greatly improve the possibilities for global scale analyses of (reused) CT data.
|
|
|
McGreevy, P., & Yeates, J. (2018). Horses (Equus caballus). In Companion Animal Care and Welfare. Companion Animal Care and Welfare.
Abstract: Summary Domestic horses are equid members of the class Mammalia, order Perissodactyla, and family Equidae. Horses are obligate herbivores, with nutritional requirements as listed in a table. Adequate space is necessary for exercise, exploration, flight, sharing resources, play, and rolling. Company is essential for all horses, including stallions. Company provides opportunities for mutual grooming and play and allows horses to stand head-to-tail to remove flies. Unhandled horses may respond to humans as they would to predators, whereas handled horses' responses depend on their previous interactions with humans. Horses can suffer from several diseases as listed in another table. The best method of euthanasia of horses is usually sedation followed by either cranial shooting or the injection of an overdose of pentobarbitone into the jugular vein. Behavioural signs of distress can include increased locomotory activity, vigilance behaviours, neighing, snorting, pawing, nibbling walls and buckets, defaecation, rearing, kicking stable walls or doors, and high-stepping 'prancing'.
|
|
|
Bücheler, T., & Sieg, J. H. (2011). Understanding Science 2.0: Crowdsourcing and Open Innovation in the Scientific Method. Proceedings of the 2nd European Future Technologies Conference and Exhibition 2011 (FET 11), 7, 327–329.
Abstract: The innovation process is currently undergoing significant change in many industries. The World Wide Web has created a virtual world of collective intelligence and helped large groups of people connect and collaborate in the innovation process [1]. Von Hippel [2], for instance, states that a large number of users of a given technology will come up with innovative ideas. This process, originating in business, is now also being observed in science. Discussions around “Citizen Science” [3] and “Science 2.0” [4] suggest the same effects are relevant for fundamental research practices. “Crowdsourcing” [5] and “Open Innovation” [6] as well as other names for those paradigms, like Peer Production, Wikinomics, Swarm Intelligence etc., have become buzzwords in recent years. However, serious academic research efforts have also been started in many disciplines. In essence, these buzzwords all describe a form of collective intelligence that is enabled by new technologies, particularly internet connectivity. The focus of most current research on this topic is in the for-profit domain, i.e. organizations willing (and able) to pay large sums to source innovation externally, for instance through innovation contests. Our research is testing the applicability of Crowdsourcing and some techniques from Open Innovation to the scientific method and basic science in a non-profit environment (e.g., a traditional research university). If the tools are found to be useful, this may significantly change how some research tasks are conducted: While large, apriori unknown crowds of “irrational agents” (i.e. humans) are used to support scientists (and teams thereof) in several research tasks through the internet, the usefulness and robustness of these interactions as well as scientifically important factors like quality and validity of research results are tested in a systematic manner. The research is highly interdisciplinary and is done in collaboration with scientists from sociology, psychology, management science, economics, computer science, and artificial intelligence. After a pre-study, extensive data collection has been conducted and the data is currently being analyzed. The paper presents ideas and hypotheses and opens the discussion for further input.
|
|
|
Myslajek, R. W., Tracz, M., Tracz, M., Tomczak, P., Szewczyk, M., Niedzwiecka, N., et al. (2018). Spatial organization in wolves Canis lupus recolonizing north-west Poland: Large territories at low population density. Mamm. Biol., 92, 37–44.
Abstract: Monitoring of the wolf Canis lupus is a demanding task as it lives in low densities, utilizes vast home ranges and disperses over large areas. These factors make obtaining accurate data about population parameters over the whole distribution area of the species impossible. Thus detailed local studies on socio-spatial organization are essential to calibrate information obtained over a larger area. We applied GPS/GSM telemetry, non-invasive genetic sampling, year-round tracking, camera trapping and howling stimulations to determine the number of family groups, population density and home-range sizes of wolves in the Drawa Forest (DF, western Poland, 2500 km2), an area recently recolonized by the species. Home ranges of three collared male wolves ranged from 321.8 to 420.6 km2 (MCP 100%) and from 187.5 to 277.5 km2 (Kernel 95%), but core areas had a size of 30.5-84.7 km2 (MCP50%) and 35.0-88.8 km2 (Kernel 50%). Mean near neighbour distance between centres of 6 tracked pack homesites was 15.3 km. The number of wolves in DF increased from 14 individuals in 2013/2014 to 30 in 2016/2017. The annual rate of increase varied from 43% in 2014/2015 to 7% in the final year. Population density for the whole study area was relatively low (1.2 indiv./100 km2 in 2016/2017), but densities within territories of two packs studied with telemetry were 1.9 and 1.5 indiv./100 km2. Mean pack size varied between 3.5 and 5.6 individuals, with the largest pack comprising 8 wolves. Mean number of pups observed in summers (June-August) was 4.5. Differences in home range sizes between wolves in western and eastern Poland indicate that results of regional studies cannot be freely extrapolated despite close genetic relationships. Thus, decisions related to management of wolf habitats should be based on intensive local studies.
|
|
|
Vitale, V., Balocchi, R., Varanini, M., Sgorbini, M., Macerata, A., Sighieri, C., et al. (2013). The effects of restriction of movement on the reliability of heart rate variability measurements in the horse (Equus caballus). J. Vet. Behav., 8(5), 400–403.
Abstract: Analysis of heart rate variability (HRV) is a noninvasive approach for investigating the sympathovagal balance of the autonomic nervous system. In recent years, HRV has been increasingly evaluated in animal research. In horses, it has been suggested that basal resting conditions can be achieved by restraining them. The aim of this study was to verify how restriction of movement influences HRV i2n horses. Ten healthy standardbred mares were used to measure the electrocardiographic signal under 2 conditions: free to move in the stall and restrained in the stock. Results indicate that the restriction of movement is associated with increased nervous system sympathetic activity not consistent with resting conditions.
|
|
|
Hendriksen, P., Elmgreen, K., & Ladewig, J. (2011). Trailer-loading of horses: Is there a difference between positive and negative reinforcement concerning effectiveness and stress-related signs? J. Vet. Behav., 6(5), 261–266.
Abstract: The traditional way to train horses is by the application of negative reinforcement (NR). In the past few years, however, the use of positive reinforcement (PR) has become more common. To evaluate the effectiveness and the possible stressor effect of the 2 training methods, 12 horses showing severe trailer-loading problems were selected and exposed to trailer-loading. They were randomly assigned to one of the 2 methods. NR consisted of various degrees of pressure (lead rope pulling, whip tapping). Pressure was removed as soon as the horse complied. PR horses were exposed to clicker training and taught to follow a target into the trailer. Heart rate (HR) was recorded every 5 seconds and behavior denoting discomfort was observed using one-zero sampling with 10 seconds sampling intervals. Training was completed when the horse could enter the trailer upon a signal, or was terminated after a maximum of 15 sessions. Of the 12 horses, 10 reached the criterion within the 15 sessions. One horse was eliminated from the study because of illness and 1 PR horse failed to enter the trailer. A Mann-Whitney U-test indicated that the horses trained with NR displayed significantly more discomfort behavior per training session than horses trained with PR (NR: 13.26 ± 3.25; PR: 3.17 ± 8.93, P < 0.0001) and that horses in the PR group spent less time (second) per session to complete the training criterion (NR: 672.9 ± 247.12; PR: 539.81 ± 166.37, P < 0.01). A Mann-Whitney U-test showed that no difference existed in mean HR (bpm) between the 2 groups (NR: 53.06 ± 11.73 bpm; PR: 55.54 ± 6.7 bpm, P > 0.05), but a Wilcoxon test showed a difference in the PR group between the baseline of HR and mean HR obtained during training sessions (baseline PR: 43 ± 8.83 bpm; PR: 55.54 ± 6.7 bpm, P < 0.05). In conclusion, the PR group provided the fastest training solution and expressed less stress response. Thus, the PR procedure could provide a preferable training solution when training horses in potentially stressing situations.
|
|
|
McGreevy, P. D., & McLean, A. N. (2009). Punishment in horse-training and the concept of ethical equitation. J. Vet. Behav., 4(5), 193–197.
Abstract: By definition, punishment makes a response less likely in the future. Because horses are largely trained by negative reinforcement, they are susceptible to inadvertent punishment. Delays in the release of pressure can make desirable responses less likely and thus punish them. This study examines the correct use of negative reinforcement and identifies a continuum between poorly timed negative reinforcement and punishment. It explores some of the problems of non-contingent punishment and the prospect of learned helplessness and experimental neurosis. It concludes by introducing the concept of ethical equitation.
|
|
|
Maury, M., Murphy, K., Kumar, S., Mauerer, A., & Lee, G. (2005). Spray-drying of proteins: effects of sorbitol and trehalose on aggregation and FT-IR amide I spectrum of an immunoglobulin G. Eur. J. Pharm. Biopharm., 59(2), 251–261.
Abstract: An immunoglobulin G (IgG) was spray-dried on a Büchi 190 laboratory spray-dryer at inlet and outlet air temperatures of 130 and 190°C, respectively. The IgG solution contains initially 115mg/ml IgG plus 50mg/ml sorbitol. After dialysis, at least 80% of low molecular weight component was removed. After spray-drying the dialyzed IgG and immediate redissolution of the powder, an increase in aggregates from 1 to 17% occurred. A major shift towards increase β-sheet structure was detected in the spray-dried solid, which, however, reverted to native structure on redissolution of the powder. A correlation between aggregation determined by size exclusion chromatography and alterations in secondary structure determined by Fourier transformation infra-red spectroscopy could not therefore be established. On spray-drying a non-dialyzed, sorbitol-containing IgG only some 0.7% aggregates were formed. The sorbitol is therefore evidently able to stabilize partially the IgG during the process of spray-drying. Addition of trehalose to the liquid feed produced quantitatively the same stabilizing action on the IgG during spray-drying as did the sorbitol. This finding again points towards a water replacement stabilization mechanism. The IgG spray-dried powder prepared from the dialyzed liquid feed showed continued substantial aggregation on dry storage at 25°C. This was substantially less in the non-dialyzed, sorbitol-containing spray-dried powder. Addition of trehalose to both dialyzed and non-dialyzed system produced substantial improvement in storage stability and reduction in aggregate formation in storage. The quantitative stabilizing effect of the trehalose was only slightly higher than that of the sorbitol. Taken together, these results indicate that both the sorbitol and trehalose stabilize the IgG primarily by a water replacement mechanism rather than by glassy immobilization. The relevance of this work is its questioning of the importance of the usually considered dominance of glassy stabilization of protein in dried systems of high glass transition temperature, such as trehalose. The low glass transition temperature sorbitol produces almost equal process and storage stability in this case.
|
|