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Author |
Collins, G.H.; Petersen, S.L.; Carr, C.A.; Pielstick, L. |
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Title |
Testing VHF/GPS Collar Design and Safety in the Study of Free-Roaming Horses |
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Journal Article |
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2014 |
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Plos One |
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Plos One |
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9 |
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9 |
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e103189 |
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Effective and safe monitoring techniques are needed by U.S. land managers to understand free-roaming horse behavior and habitat use and to aid in making informed management decisions. Global positioning system (GPS) and very high frequency (VHF) radio collars can be used to provide high spatial and temporal resolution information for detecting free-roaming horse movement. GPS and VHF collars are a common tool used in wildlife management, but have rarely been used for free-roaming horse research and monitoring in the United States. The purpose of this study was to evaluate the design, safety, and detachment device on GPS/VHF collars used to collect free-roaming horse location and movement data. Between 2009 and 2010, 28 domestic and feral horses were marked with commercial and custom designed VHF/GPS collars. Individual horses were evaluated for damage caused by the collar placement, and following initial observations, collar design was modified to reduce the potential for injury. After collar modifications, which included the addition of collar length adjustments to both sides of the collar allowing for better alignment of collar and neck shapes, adding foam padding to the custom collars to replicate the commercial collar foam padding, and repositioning the detachment device to reduce wear along the jowl, we observed little to no evidence of collar wear on horses. Neither custom-built nor commercial collars caused injury to study horses, however, most of the custom-built collars failed to collect data. During the evaluation of collar detachment devices, we had an 89% success rate of collar devices detaching correctly. This study showed that free-roaming horses can be safely marked with GPS and/or VHF collars with minimal risk of injury, and that these collars can be a useful tool for monitoring horses without creating a risk to horse health and wellness. |
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Equine Behaviour @ team @ |
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6209 |
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Pinho, G.M.; Gonçalves da Silva, A.; Hrbek, T.; Venticinque, E.M.; Farias, I.P. |
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Title |
Kinship and Social Behavior of Lowland Tapirs (Tapirus terrestris) in a Central Amazon Landscape |
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2014 |
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Plos One |
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Plos One |
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9 |
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3 |
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e92507 |
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We tested the hypothesis that tapirs tolerate individuals from adjacent and overlapping home ranges if they are related. We obtained genetic data from fecal samples collected in the Balbina reservoir landscape, central Amazon. Samples were genotyped at 14 microsatellite loci, of which five produced high quality informative genotypes. Based on an analysis of 32 individuals, we inferred a single panmictic population with high levels of heterozygosity. Kinship analysis identified 10 pairs of full siblings or parent-offspring, 10 pairs of half siblings and 25 unrelated pairs. In 10 cases, the related individuals were situated on opposite margins of the reservoir, suggesting that tapirs are capable of crossing the main river, even after damming. The polygamous model was the most likely mating system for Tapirus terrestris. Moran's I index of allele sharing between pairs of individuals geographically close (<3 km) was similar to that observed between individual pairs at larger distances (>3 km). Confirming this result, the related individuals were not geographically closer than unrelated ones (W = 188.5; p = 0.339). Thus, we found no evidence of a preference for being close to relatives and observed a tendency for dispersal. The small importance of relatedness in determining spatial distribution of individuals is unusual in mammals, but not unheard of. Finally, non-invasive sampling allowed efficient access to the genetic data, despite the warm and humid climate of the Amazon, which accelerates DNA degradation. |
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Equine Behaviour @ team @ |
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6138 |
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Pirault, P.; Danvy, S.; Verrier, E.; Leroy, G. |
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Title |
Genetic Structure and Gene Flows within Horses: A Genealogical Study at the French Population Scale |
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2013 |
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Plos One |
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Plos One |
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8 |
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4 |
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e61544 |
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Since horse breeds constitute populations submitted to variable and multiple outcrossing events, we analyzed the genetic structure and gene flows considering horses raised in France. We used genealogical data, with a reference population of 547,620 horses born in France between 2002 and 2011, grouped according to 55 breed origins. On average, individuals had 6.3 equivalent generations known. Considering different population levels, fixation index decreased from an overall species FIT of 1.37%, to an average of -0.07% when considering the 55 origins, showing that most horse breeds constitute populations without genetic structure. We illustrate the complexity of gene flows existing among horse breeds, a few populations being closed to foreign influence, most, however, being submitted to various levels of introgression. In particular, Thoroughbred and Arab breeds are largely used as introgression sources, since those two populations explain together 26% of founder origins within the overall horse population. When compared with molecular data, breeds with a small level of coancestry also showed low genetic distance; the gene pool of the breeds was probably impacted by their reproducer exchanges. |
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Equine Behaviour @ team @ |
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6215 |
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Petersen, J.L.; Mickelson, J.R.; Cothran, E.G.; Andersson, L.S.; Axelsson, J.; Bailey, E.; Bannasch, D.; Binns, M.M.; Borges, A.S.; Brama, P.; da Câmara Machado, A.; Distl, O.; Felicetti, M.; Fox-Clipsham, L.; Graves, K.T.; Guérin, G.; Haase, B.; Hasegawa, T.; Hemmann, K.; Hill, E.W.; Leeb, T.; Lindgren, G.; Lohi, H.; Lopes, M.S.; McGivney, B.A.; Mikko, S.; Orr, N.; Penedo, M.C.T.; Piercy, R.J.; Raekallio, M.; Rieder, S.; Røed, K.H.; Silvestrelli, M.; Swinburne, J.; Tozaki, T.; Vaudin, M.; M. Wade, C.; McCue, M.E. |
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Title |
Genetic Diversity in the Modern Horse Illustrated from Genome-Wide SNP Data |
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Journal Article |
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Year |
2013 |
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Plos One |
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Plos One |
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8 |
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1 |
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e54997 |
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Horses were domesticated from the Eurasian steppes 5,000-6,000 years ago. Since then, the use of horses for transportation, warfare, and agriculture, as well as selection for desired traits and fitness, has resulted in diverse populations distributed across the world, many of which have become or are in the process of becoming formally organized into closed, breeding populations (breeds). This report describes the use of a genome-wide set of autosomal SNPs and 814 horses from 36 breeds to provide the first detailed description of equine breed diversity. FST calculations, parsimony, and distance analysis demonstrated relationships among the breeds that largely reflect geographic origins and known breed histories. Low levels of population divergence were observed between breeds that are relatively early on in the process of breed development, and between those with high levels of within-breed diversity, whether due to large population size, ongoing outcrossing, or large within-breed phenotypic diversity. Populations with low within-breed diversity included those which have experienced population bottlenecks, have been under intense selective pressure, or are closed populations with long breed histories. These results provide new insights into the relationships among and the diversity within breeds of horses. In addition these results will facilitate future genome-wide association studies and investigations into genomic targets of selection. |
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Public Library of Science |
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Equine Behaviour @ team @ |
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6214 |
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Dwan, K.; Altman, D.G.; Arnaiz, J.A.; Bloom, J.; Chan, A.-W.; Cronin, E.; Decullier, E.; Easterbrook, P.J.; Von Elm, E.; Gamble, C.; Ghersi, D.; Ioannidis, J.P.A.; Simes, J.; Williamson, P.R. |
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Systematic Review of the Empirical Evidence of Study Publication Bias and Outcome Reporting Bias |
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2008 |
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Plos One |
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Plos One |
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3 |
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8 |
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e3081 |
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Background The increased use of meta-analysis in systematic reviews of healthcare interventions has highlighted several types of bias that can arise during the completion of a randomised controlled trial. Study publication bias has been recognised as a potential threat to the validity of meta-analysis and can make the readily available evidence unreliable for decision making. Until recently, outcome reporting bias has received less attention. Methodology/Principal Findings We review and summarise the evidence from a series of cohort studies that have assessed study publication bias and outcome reporting bias in randomised controlled trials. Sixteen studies were eligible of which only two followed the cohort all the way through from protocol approval to information regarding publication of outcomes. Eleven of the studies investigated study publication bias and five investigated outcome reporting bias. Three studies have found that statistically significant outcomes had a higher odds of being fully reported compared to non-significant outcomes (range of odds ratios: 2.2 to 4.7). In comparing trial publications to protocols, we found that 40-62% of studies had at least one primary outcome that was changed, introduced, or omitted. We decided not to undertake meta-analysis due to the differences between studies. Conclusions Recent work provides direct empirical evidence for the existence of study publication bias and outcome reporting bias. There is strong evidence of an association between significant results and publication; studies that report positive or significant results are more likely to be published and outcomes that are statistically significant have higher odds of being fully reported. Publications have been found to be inconsistent with their protocols. Researchers need to be aware of the problems of both types of bias and efforts should be concentrated on improving the reporting of trials. |
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Equine Behaviour @ team @ |
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6644 |
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Briefer, E.F.; Haque, S.; Baciadonna, L.; McElligott, A.G. |
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Goats excel at learning and remembering a highly novel cognitive task |
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2014 |
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Frontiers in Zoology |
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Front. Zool. |
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11 |
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1 |
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20 |
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The computational demands of sociality (maintaining group cohesion, reducing conflict) and ecological problems (extractive foraging, memorizing resource locations) are the main drivers proposed to explain the evolution cognition. Different predictions follow, about whether animals would preferentially learn new tasks socially or not, but the prevalent view today is that intelligent species should excel at social learning. However, the predictions were originally used to explain primate cognition, and studies of species with relatively smaller brains are rare. By contrast, domestication has often led to a decrease in brain size, which could affect cognition. In domestic animals, the relaxed selection pressures compared to a wild environment could have led to reduced social and physical cognition. Goats possess several features commonly associated with advanced cognition, such as successful colonization of new environments and complex fission-fusion societies. Here, we assessed goat social and physical cognition as well as long-term memory of a complex two-step foraging task (food box cognitive challenge), in order to investigate some of the main selection pressures thought to affect the evolution of ungulate cognition. |
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1742-9994 |
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Equine Behaviour @ team @ Briefer2014 |
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6376 |
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Dong, D.; Jones, G.; Zhang, S. |
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Dynamic evolution of bitter taste receptor genes in vertebrates |
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2009 |
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BMC Evolutionary Biology |
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12 |
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Sensing bitter tastes is crucial for many animals because it can prevent them from ingesting harmful foods. This process is mainly mediated by the bitter taste receptors (T2R), which are largely expressed in the taste buds. Previous studies have identified some T2R gene repertoires, and marked variation in repertoire size has been noted among species. However, the mechanisms underlying the evolution of vertebrate T2R genes remain poorly understood. |
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1471-2148 |
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Equine Behaviour @ team @ Dong2009 |
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6637 |
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Chapron, G.; Kaczensky, P.; Linnell, J.D.C.; Arx, M.; Huber, D.; Andrén, H. |
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Recovery of large carnivores in Europe's modern human-dominated landscapes |
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2014 |
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Science |
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346 |
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Equine Behaviour @ team @ Chapron2014 |
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6451 |
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Ripple, W.J.; Estes, J.A.; Beschta, R.L.; Wilmers, C.C.; Ritchie, E.G.; Hebblewhite, M. |
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Status and ecological effects of the world's largest carnivores |
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2014 |
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Equine Behaviour @ team @ Ripple2014 |
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6445 |
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Riede, T.; Herzel, H.; Mehwald, D.; Seidner, W.; Trumler, E.; Böhme, G. |
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Nonlinear phenomena in the natural howling of a dog-wolf mix |
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2000 |
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J Acoust Soc Am |
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Equine Behaviour @ team @ Riede2000 |
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