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Healy, S. D., & Rowe, C. (2013). Costs and benefits of evolving a larger brain: doubts over the evidence that large brains lead to better cognition. Anim Behav, 86.
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Briefer, E. F., & McElligott, A. G. (2013). Rescued goats at a sanctuary display positive mood after former neglect. Appl Anim Behav Sci, 146.
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Herbst, C. T., Herzel, H., Svec, J. G., Wyman, M. T., & Fitch, W. T. (2013). Visualization of system dynamics using phasegrams. J R Soc Interface, 10.
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Mann Janet, & Patterson Eric M. (2013). Tool use by aquatic animals. Phil. Trans. Biol. Sci., 368(1630), 20120424.
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Strien, A. J., Swaay, C. A. M., & Termaat, T. (2013). Opportunistic citizen science data of animal species produce reliable estimates of distribution trends if analysed with occupancy models. J Appl Ecol, 50(6), 1450–1458.
Abstract: Summary Many publications documenting large-scale trends in the distribution of species make use of opportunistic citizen data, that is, observations of species collected without standardized field protocol and without explicit sampling design. It is a challenge to achieve reliable estimates of distribution trends from them, because opportunistic citizen science data may suffer from changes in field efforts over time (observation bias), from incomplete and selective recording by observers (reporting bias) and from geographical bias. These, in addition to detection bias, may lead to spurious trends. We investigated whether occupancy models can correct for the observation, reporting and detection biases in opportunistic data. Occupancy models use detection/nondetection data and yield estimates of the percentage of occupied sites (occupancy) per year. These models take the imperfect detection of species into account. By correcting for detection bias, they may simultaneously correct for observation and reporting bias as well. We compared trends in occupancy (or distribution) of butterfly and dragonfly species derived from opportunistic data with those derived from standardized monitoring data. All data came from the same grid squares and years, in order to avoid any geographical bias in this comparison. Distribution trends in opportunistic and monitoring data were well-matched. Strong trends observed in monitoring data were rarely missed in opportunistic data. Synthesis and applications. Opportunistic data can be used for monitoring purposes if occupancy models are used for analysis. Occupancy models are able to control for the common biases encountered with opportunistic data, enabling species trends to be monitored for species groups and regions where it is not feasible to collect standardized data on a large scale. Opportunistic data may thus become an important source of information to track distribution trends in many groups of species.
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López-Bao, J. V., Sazatornil, V., Llaneza, L., & Rodríguez, A. (2013). Indirect Effects on Heathland Conservation and Wolf Persistence of Contradictory Policies that Threaten Traditional Free-Ranging Horse Husbandry. Conservation Letters, 6(6), 448–455.
Abstract: Abstract Conservation agencies within the European Union promote the restoration of traditional land uses as a cost-effective way to preserve biodiversity outside reserves. Although the European Union pursues the integration of the environment into strategic decision-making, it also dictates sectoral policies that may damage farmland biodiversity. We illustrate this point by outlining the socioeconomic factors that allow the persistence of traditional free-ranging horse husbandry in Galicia, northwestern Spain. Free-ranging Galician mountain ponies provide ecological and socioeconomic services including the prevention of forest fires, the maintenance of heathlands and wolves, and the attenuation of wolf-human conflicts. This traditional livestock system may have persisted because it entails negligible costs for farmers. Wolf predation upon Galician mountain ponies does not threaten farmer's economies and seems to be tolerated better than attacks to more valuable stock. Recently, European Union's regulations on animal welfare, carcass management, or meat production put new economic and administrative burdens on farmers, make free-ranging horse rearing economically unsustainable, and incentivize its abandonment. The aim of the European Union to integrate environmental policies may be successful to preserve farmland biodiversity only through careful anticipation of the side effects of apparently unrelated regulations on the fragile equilibrium that sustain traditional land uses.
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López-Bao, J. V., Sazatornil, V., Llaneza, L., & Rodríguez, A. (2013). Indirect Effects on Heathland Conservation and Wolf Persistence of Contradictory Policies that Threaten Traditional Free-Ranging Horse Husbandry. Conservation Letters, 6(6), 448–455.
Abstract: Abstract Conservation agencies within the European Union promote the restoration of traditional land uses as a cost-effective way to preserve biodiversity outside reserves. Although the European Union pursues the integration of the environment into strategic decision-making, it also dictates sectoral policies that may damage farmland biodiversity. We illustrate this point by outlining the socioeconomic factors that allow the persistence of traditional free-ranging horse husbandry in Galicia, northwestern Spain. Free-ranging Galician mountain ponies provide ecological and socioeconomic services including the prevention of forest fires, the maintenance of heathlands and wolves, and the attenuation of wolf-human conflicts. This traditional livestock system may have persisted because it entails negligible costs for farmers. Wolf predation upon Galician mountain ponies does not threaten farmer's economies and seems to be tolerated better than attacks to more valuable stock. Recently, European Union's regulations on animal welfare, carcass management, or meat production put new economic and administrative burdens on farmers, make free-ranging horse rearing economically unsustainable, and incentivize its abandonment. The aim of the European Union to integrate environmental policies may be successful to preserve farmland biodiversity only through careful anticipation of the side effects of apparently unrelated regulations on the fragile equilibrium that sustain traditional land uses.
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Petersen, J. L., Mickelson, J. R., Cothran, E. G., Andersson, L. S., Axelsson, J., Bailey, E., et al. (2013). Genetic Diversity in the Modern Horse Illustrated from Genome-Wide SNP Data. Plos One, 8(1), e54997.
Abstract: Horses were domesticated from the Eurasian steppes 5,000-6,000 years ago. Since then, the use of horses for transportation, warfare, and agriculture, as well as selection for desired traits and fitness, has resulted in diverse populations distributed across the world, many of which have become or are in the process of becoming formally organized into closed, breeding populations (breeds). This report describes the use of a genome-wide set of autosomal SNPs and 814 horses from 36 breeds to provide the first detailed description of equine breed diversity. FST calculations, parsimony, and distance analysis demonstrated relationships among the breeds that largely reflect geographic origins and known breed histories. Low levels of population divergence were observed between breeds that are relatively early on in the process of breed development, and between those with high levels of within-breed diversity, whether due to large population size, ongoing outcrossing, or large within-breed phenotypic diversity. Populations with low within-breed diversity included those which have experienced population bottlenecks, have been under intense selective pressure, or are closed populations with long breed histories. These results provide new insights into the relationships among and the diversity within breeds of horses. In addition these results will facilitate future genome-wide association studies and investigations into genomic targets of selection.
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Pirault, P., Danvy, S., Verrier, E., & Leroy, G. (2013). Genetic Structure and Gene Flows within Horses: A Genealogical Study at the French Population Scale. Plos One, 8(4), e61544.
Abstract: Since horse breeds constitute populations submitted to variable and multiple outcrossing events, we analyzed the genetic structure and gene flows considering horses raised in France. We used genealogical data, with a reference population of 547,620 horses born in France between 2002 and 2011, grouped according to 55 breed origins. On average, individuals had 6.3 equivalent generations known. Considering different population levels, fixation index decreased from an overall species FIT of 1.37%, to an average of -0.07% when considering the 55 origins, showing that most horse breeds constitute populations without genetic structure. We illustrate the complexity of gene flows existing among horse breeds, a few populations being closed to foreign influence, most, however, being submitted to various levels of introgression. In particular, Thoroughbred and Arab breeds are largely used as introgression sources, since those two populations explain together 26% of founder origins within the overall horse population. When compared with molecular data, breeds with a small level of coancestry also showed low genetic distance; the gene pool of the breeds was probably impacted by their reproducer exchanges.
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Baciadonna, L., McElligott, A. G., & Briefer, E. F. (2013). Goats favour personal over social information in an experimental foraging task. Peer J, 1.
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