Records |
Author |
Cilnis, M.J.; Kang, W.; Weaver, S.C. |
Title |
Genetic conservation of Highlands J viruses |
Type |
Journal Article |
Year |
1996 |
Publication |
Virology |
Abbreviated Journal |
Virology |
Volume |
218 |
Issue |
2 |
Pages |
343-351 |
Keywords |
Alphavirus/*genetics; Alphavirus Infections/transmission/veterinary/virology; Amino Acid Sequence; Animals; Base Sequence; Conserved Sequence; Disease Outbreaks; Encephalitis, Viral/veterinary/virology; *Evolution, Molecular; Horses; Molecular Sequence Data; Phylogeny; RNA, Viral/genetics; Sequence Alignment; Sequence Analysis, DNA; Sequence Homology, Nucleic Acid; Turkeys; Variation (Genetics)/*genetics |
Abstract |
We studied molecular evolution of the mosquito-borne alphavirus Highlands J (HJ) virus by sequencing PCR products generated from 19 strains isolated between 1952 and 1994. Sequences of 1200 nucleotides including portions of the E1 gene and the 3' untranslated region revealed a relatively slow evolutionary rate estimated at 0.9-1.6 x 10(-4) substitutions per nucleotide per year. Phylogenetic trees indicated that all HJ viruses descended from a common ancestor and suggested the presence of one dominant lineage in North America. However, two or more minor lineages probably circulated simultaneously for periods of years to a few decades. Strains isolated from a horse suffering encephalitis, and implicated in a recent turkey outbreak, were not phylogenetically distinct from strains isolated in other locations during the same time periods. Our findings are remarkably similar to those we obtained previously for another North American alphavirus, eastern equine encephalomyelitis virus, with which Highlands J shares primary mosquito and avian hosts, geographical distribution, and ecology. These results support the hypotheses that the duration of the transmission season affects arboviral evolutionary rates and vertebrate host mobility influences genetic diversity. |
Address |
Department of Biology, University of California, San Diego, La Jolla 92093-0116, USA |
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English |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0042-6822 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
PMID:8610461 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
2657 |
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Author |
Macfadden, B.J. |
Title |
Evolution. Fossil horses--evidence for evolution |
Type |
Journal Article |
Year |
2005 |
Publication |
Science (New York, N.Y.) |
Abbreviated Journal |
Science |
Volume |
307 |
Issue |
5716 |
Pages |
1728-1730 |
Keywords |
Animals; Body Size; DNA, Mitochondrial; Diet; *Equidae/anatomy & histology/classification/genetics; *Evolution; Feeding Behavior; *Fossils; *Horses/anatomy & histology/classification/genetics; Paleodontology; Phylogeny; Time; Tooth/anatomy & histology |
Abstract |
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Address |
Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA. bmacfadd@flmnh.ufl.edu |
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English |
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Series Editor |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1095-9203 |
ISBN |
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Medium |
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Area |
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Conference |
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Notes |
PMID:15774746 |
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no |
Call Number |
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Serial |
1892 |
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Author |
Jansen, T.; Forster, P.; Levine, M.A.; Oelke, H.; Hurles, M.; Renfrew, C.; Weber, J.; Olek, K. |
Title |
Mitochondrial DNA and the origins of the domestic horse |
Type |
Journal Article |
Year |
2002 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
Volume |
99 |
Issue |
16 |
Pages |
10905-10910 |
Keywords |
Animals; Animals, Domestic/classification/*genetics; Base Sequence; DNA, Complementary; *DNA, Mitochondrial; *Evolution, Molecular; Horses/classification/*genetics; Molecular Sequence Data; Phylogeny |
Abstract |
The place and date of the domestication of the horse has long been a matter for debate among archaeologists. To determine whether horses were domesticated from one or several ancestral horse populations, we sequenced the mitochondrial D-loop for 318 horses from 25 oriental and European breeds, including American mustangs. Adding these sequences to previously published data, the total comes to 652, the largest currently available database. From these sequences, a phylogenetic network was constructed that showed that most of the 93 different mitochondrial (mt)DNA types grouped into 17 distinct phylogenetic clusters. Several of the clusters correspond to breeds and/or geographic areas, notably cluster A2, which is specific to Przewalski's horses, cluster C1, which is distinctive for northern European ponies, and cluster D1, which is well represented in Iberian and northwest African breeds. A consideration of the horse mtDNA mutation rate together with the archaeological timeframe for domestication requires at least 77 successfully breeding mares recruited from the wild. The extensive genetic diversity of these 77 ancestral mares leads us to conclude that several distinct horse populations were involved in the domestication of the horse. |
Address |
Biopsytec Analytik GmbH, Marie-Curie-Strasse 1, 53359 Rheinbach, Germany. jansen@biopsytec.com |
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English |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0027-8424 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
PMID:12130666 |
Approved |
no |
Call Number |
refbase @ user @ |
Serial |
772 |
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Author |
Hauser, M.D.; Kralik, J.; Botto-Mahan, C.; Garrett, M.; Oser, J. |
Title |
Self-recognition in primates: phylogeny and the salience of species-typical features |
Type |
Journal Article |
Year |
1995 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
Volume |
92 |
Issue |
23 |
Pages |
10811-10814 |
Keywords |
Animals; *Behavior, Animal; *Cognition; Discrimination (Psychology); Exploratory Behavior; Female; Hair Color; Male; Phylogeny; Psychology, Comparative; Research Design; Saguinus/*psychology; *Self Concept; Species Specificity; Touch; *Visual Perception |
Abstract |
Self-recognition has been explored in nonlinguistic organisms by recording whether individuals touch a dye-marked area on visually inaccessible parts of their face while looking in a mirror or inspect parts of their body while using the mirror's reflection. Only chimpanzees, gorillas, orangutans, and humans over the age of approximately 2 years consistently evidence self-directed mirror-guided behavior without experimenter training. To evaluate the inferred phylogenetic gap between hominoids and other animals, a modified dye-mark test was conducted with cotton-top tamarins (Saguinus oedipus), a New World monkey species. The white hair on the tamarins' head was color-dyed, thereby significantly altering a visually distinctive species-typical feature. Only individuals with dyed hair and prior mirror exposure touched their head while looking in the mirror. They looked longer in the mirror than controls, and some individuals used the mirror to observe visually inaccessible body parts. Prior failures to pass the mirror test may have been due to methodological problems, rather than to phylogenetic differences in the capacity for self-recognition. Specifically, an individual's sensitivity to experimentally modified parts of its body may depend crucially on the relative saliency of the modified part (e.g., face versus hair). Moreover, and in contrast to previous claims, we suggest that the mirror test may not be sufficient for assessing the concept of self or mental state attribution in nonlinguistic organisms. |
Address |
Department of Anthropology, Harvard University, Cambridge, MA 02138, USA |
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English |
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Series Issue |
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Edition |
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ISSN |
0027-8424 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
PMID:7479889 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
2825 |
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Author |
Fenton, B.; Ratcliffe, J. |
Title |
Animal behaviour: eavesdropping on bats |
Type |
Journal Article |
Year |
2004 |
Publication |
Nature |
Abbreviated Journal |
Nature |
Volume |
429 |
Issue |
6992 |
Pages |
612-613 |
Keywords |
Acoustics; Animals; Chiroptera/anatomy & histology/classification/genetics/*physiology; Echolocation/*physiology; *Evolution; Phylogeny; Predatory Behavior/physiology; Species Specificity |
Abstract |
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Place of Publication |
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Editor |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1476-4687 |
ISBN |
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Medium |
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Area |
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Conference |
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Notes |
PMID:15190335 |
Approved |
no |
Call Number |
refbase @ user @ |
Serial |
500 |
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Author |
Novacek, M.J. |
Title |
Mammalian phylogeny: shaking the tree |
Type |
Journal Article |
Year |
1992 |
Publication |
Nature |
Abbreviated Journal |
Nature |
Volume |
356 |
Issue |
6365 |
Pages |
121-125 |
Keywords |
Animals; Evolution; Fossils; Mammals/classification/*genetics; *Phylogeny |
Abstract |
Recent palaeontological discoveries and the correspondence between molecular and morphological results provide fresh insight on the deep structure of mammalian phylogeny. This new wave of research, however, has yet to resolve some important issues. |
Address |
American Museum of Natural History, New York 10024 |
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Publisher |
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Place of Publication |
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English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0028-0836 |
ISBN |
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Notes |
PMID:1545862 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
3546 |
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Author |
Sebastiani, F.; Meiswinkel, R.; Gomulski, L.M.; Guglielmino, C.R.; Mellor, P.S.; Malacrida, A.R.; Gasperi, G. |
Title |
Molecular differentiation of the Old World Culicoides imicola species complex (Diptera, Ceratopogonidae), inferred using random amplified polymorphic DNA markers |
Type |
Journal Article |
Year |
2001 |
Publication |
Molecular Ecology |
Abbreviated Journal |
Mol Ecol |
Volume |
10 |
Issue |
7 |
Pages |
1773-1786 |
Keywords |
Africa; Animals; Ceratopogonidae/*classification/*genetics; Ecology; Evolution, Molecular; Female; *Genetic Markers; Madagascar; Phylogeny; *Polymorphism, Genetic; *Random Amplified Polymorphic DNA Technique; Variation (Genetics) |
Abstract |
Samples of seven of the 10 morphological species of midges of the Culicoides imicola complex were considered. The importance of this species complex is connected to its vectorial capacity for African horse sickness virus (AHSV) and bluetongue virus (BTV). Consequently, the risk of transmission may vary dramatically, depending upon the particular cryptic species present in a given area. The species complex is confined to the Old World and our samples were collected in Southern Africa, Madagascar and the Ivory Coast. Genomic DNA of 350 randomly sampled individual midges from 19 populations was amplified using four 20-mer primers by the random amplified polymorphic DNA (RAPD) technique. One hundred and ninety-six interpretable polymorphic bands were obtained. Species-specific RAPD profiles were defined and for five species diagnostic RAPD fragments were identified. A high degree of polymorphism was detected in the species complex, most of which was observed within populations (from 64 to 76%). Principal coordinate analysis (PCO) and cluster analysis provided an estimate of the degree of variation between and within populations and species. There was substantial concordance between the taxonomies derived from morphological and molecular data. The amount and the different distributions of genetic (RAPD) variation among the taxa can be associated to their life histories, i.e. the abundance and distribution of the larval breeding sites and their seasonality. |
Address |
Department of Animal Biology, Laboratory of Zoology, University of Pavia, Piazza Botta 9, I-27100 Pavia, Italy |
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English |
Summary Language |
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Series Editor |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0962-1083 |
ISBN |
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Medium |
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Area |
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Conference |
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Notes |
PMID:11472544 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
2647 |
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Author |
Ishida, N.; Oyunsuren, T.; Mashima, S.; Mukoyama, H.; Saitou, N. |
Title |
Mitochondrial DNA sequences of various species of the genus Equus with special reference to the phylogenetic relationship between Przewalskii's wild horse and domestic horse |
Type |
Journal Article |
Year |
1995 |
Publication |
Journal of Molecular Evolution |
Abbreviated Journal |
J Mol Evol |
Volume |
41 |
Issue |
2 |
Pages |
180-188 |
Keywords |
Animals; Base Sequence; Chromosomes; Conserved Sequence/genetics; DNA, Mitochondrial/*genetics; Evolution; Genetic Variation/*genetics; Horses/*genetics; Molecular Sequence Data; *Phylogeny; RNA, Transfer, Pro/genetics; Sequence Alignment; Sequence Analysis, DNA |
Abstract |
The noncoding region between tRNAPro and the large conserved sequence block is the most variable region in the mammalian mitochondrial DNA D-loop region. This variable region (ca. 270 bp) of four species of Equus, including Mongolian and Japanese native domestic horses as well as Przewalskii's (or Mongolian) wild horse, were sequenced. These data were compared with our recently published Thoroughbred horse mitochondrial DNA sequences. The evolutionary rate of this region among the four species of Equus was estimated to be 2-4 x 10(-8) per site per year. Phylogenetic trees of Equus species demonstrate that Przewalskii's wild horse is within the genetic variation among the domestic horse. This suggests that the chromosome number change (probably increase) of the Przewalskii's wild horse occurred rather recently. |
Address |
Laboratory of Molecular and Cellular Biology, Japan Racing Association, Tokyo |
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English |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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ISSN |
0022-2844 |
ISBN |
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Conference |
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Notes |
PMID:7666447 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
5042 |
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Author |
Yokoyama, S.; Radlwimmer, F.B. |
Title |
The molecular genetics of red and green color vision in mammals |
Type |
Journal Article |
Year |
1999 |
Publication |
Genetics |
Abbreviated Journal |
Genetics |
Volume |
153 |
Issue |
2 |
Pages |
919-932 |
Keywords |
Amino Acid Sequence; Animals; Base Sequence; COS Cells; Cats; Color Perception/*genetics; DNA Primers; Deer; Dolphins; *Evolution, Molecular; Goats; Guinea Pigs; Horses; Humans; Mammals/*genetics/physiology; Mice; Molecular Sequence Data; Opsin/biosynthesis/chemistry/*genetics; *Phylogeny; Rabbits; Rats; Recombinant Proteins/biosynthesis; Reverse Transcriptase Polymerase Chain Reaction; Sciuridae; Sequence Alignment; Sequence Homology, Amino Acid; Transfection |
Abstract |
To elucidate the molecular mechanisms of red-green color vision in mammals, we have cloned and sequenced the red and green opsin cDNAs of cat (Felis catus), horse (Equus caballus), gray squirrel (Sciurus carolinensis), white-tailed deer (Odocoileus virginianus), and guinea pig (Cavia porcellus). These opsins were expressed in COS1 cells and reconstituted with 11-cis-retinal. The purified visual pigments of the cat, horse, squirrel, deer, and guinea pig have lambdamax values at 553, 545, 532, 531, and 516 nm, respectively, which are precise to within +/-1 nm. We also regenerated the “true” red pigment of goldfish (Carassius auratus), which has a lambdamax value at 559 +/- 4 nm. Multiple linear regression analyses show that S180A, H197Y, Y277F, T285A, and A308S shift the lambdamax values of the red and green pigments in mammals toward blue by 7, 28, 7, 15, and 16 nm, respectively, and the reverse amino acid changes toward red by the same extents. The additive effects of these amino acid changes fully explain the red-green color vision in a wide range of mammalian species, goldfish, American chameleon (Anolis carolinensis), and pigeon (Columba livia). |
Address |
Department of Biology, Syracuse University, Syracuse, New York 13244, USA. syokoyam@mailbox.syr.edu |
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English |
Summary Language |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0016-6731 |
ISBN |
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Conference |
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Notes |
PMID:10511567 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
4063 |
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Author |
Milinovich, G.J.; Trott, D.J.; Burrell, P.C.; van Eps, A.W.; Thoefner, M.B.; Blackall, L.L.; Al Jassim, R.A.M.; Morton, J.M.; Pollitt, C.C. |
Title |
Changes in equine hindgut bacterial populations during oligofructose-induced laminitis |
Type |
Journal Article |
Year |
2006 |
Publication |
Environmental Microbiology |
Abbreviated Journal |
Environ Microbiol |
Volume |
8 |
Issue |
5 |
Pages |
885-898 |
Keywords |
Animal Feed; Animals; Bacteria/classification/*isolation & purification; DNA, Bacterial/analysis; Disease Models, Animal; Feces/microbiology; Foot Diseases/etiology/microbiology/*veterinary; Horse Diseases/*etiology/metabolism/microbiology; Horses; In Situ Hybridization, Fluorescence; Intestines/*microbiology; Oligosaccharides/*administration & dosage/*metabolism; Phylogeny; Polymerase Chain Reaction; RNA, Bacterial/analysis; RNA, Ribosomal, 16S/analysis |
Abstract |
In the horse, carbohydrate overload is thought to play an integral role in the onset of laminitis by drastically altering the profile of bacterial populations in the hindgut. The objectives of this study were to develop and validate microbial ecology methods to monitor changes in bacterial populations throughout the course of experimentally induced laminitis and to identify the predominant oligofructose-utilizing organisms. Laminitis was induced in five horses by administration of oligofructose. Faecal specimens were collected at 8 h intervals from 72 h before to 72 h after the administration of oligofructose. Hindgut microbiota able to utilize oligofructose were enumerated throughout the course of the experiment using habitat-simulating medium. Isolates were collected and representatives identified by 16S rRNA gene sequencing. The majority of these isolates collected belonged to the genus Streptococcus, 91% of which were identified as being most closely related to Streptococcus infantarius ssp. coli. Furthermore, S. infantarius ssp. coli was the predominant oligofructose-utilizing organism isolated before the onset of lameness. Fluorescence in situ hybridization probes developed to specifically target the isolated Streptococcus spp. demonstrated marked population increases between 8 and 16 h post oligofructose administration. This was followed by a rapid population decline which corresponded with a sharp decline in faecal pH and subsequently lameness at 24-32 h post oligofructose administration. This research suggests that streptococci within the Streptococcus bovis/equinus complex may be involved in the series of events which precede the onset of laminitis in the horse. |
Address |
Australian Equine Laminitis Research Unit, School of Veterinary Science, The University of Queensland, Queensland, Australia. g.milinovich@uq.edu.au |
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English |
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Series Editor |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
1462-2912 |
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Notes |
PMID:16623745 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
2625 |
Permanent link to this record |