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Krützen, M.; Mann, J.; Heithaus, M.R.; Connor, R.C.; Bejder, L.; Sherwin, W.B. |
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Title |
Cultural transmission of tool use in bottlenose dolphins |
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Journal Article |
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2005 |
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Proceedings of the National Academy of Sciences of the United States of America |
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Proc. Natl. Acad. Sci. U.S.A. |
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102 |
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25 |
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8939-8943 |
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In Shark Bay, wild bottlenose dolphins (Tursiops sp.) apparently use marine sponges as foraging tools. We demonstrate that genetic and ecological explanations for this behavior are inadequate; thus, “sponging” classifies as the first case of an existing material culture in a marine mammal species. Using mitochondrial DNA analyses, we show that sponging shows an almost exclusive vertical social transmission within a single matriline from mother to female offspring. Moreover, significant genetic relatedness among all adult spongers at the nuclear level indicates very recent coancestry, suggesting that all spongers are descendents of one recent “Sponging Eve.” Unlike in apes, tool use in this population is almost exclusively limited to a single matriline that is part of a large albeit open social network of frequently interacting individuals, adding a new dimension to charting cultural phenomena among animals. |
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10.1073/pnas.0500232102 |
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Equine Behaviour @ team @ |
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5916 |
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Uzawa, T.; Akiyama, S.; Kimura, T.; Takahashi, S.; Ishimori, K.; Morishima, I.; Fujisawa, T. |
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Title |
Collapse and search dynamics of apomyoglobin folding revealed by submillisecond observations of alpha-helical content and compactness |
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Journal Article |
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2004 |
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Proceedings of the National Academy of Sciences of the United States of America |
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Proc. Natl. Acad. Sci. U.S.A. |
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101 |
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5 |
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1171-1176 |
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Animals; Apoproteins/*chemistry; Circular Dichroism; Cytochromes c/chemistry; Horses; Myoglobin/*chemistry; *Protein Folding; *Protein Structure, Secondary; Scattering, Radiation |
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The characterization of protein folding dynamics in terms of secondary and tertiary structures is important in elucidating the features of intraprotein interactions that lead to specific folded structures. Apomyoglobin (apoMb), possessing seven helices termed A-E, G, and H in the native state, has a folding intermediate composed of the A, G, and H helices, whose formation in the submillisecond time domain has not been clearly characterized. In this study, we used a rapid-mixing device combined with circular dichroism and small-angle x-ray scattering to observe the submillisecond folding dynamics of apoMb in terms of helical content (f(H)) and radius of gyration (R(g)), respectively. The folding of apoMb from the acid-unfolded state at pH 2.2 was initiated by a pH jump to 6.0. A significant collapse, corresponding to approximately 50% of the overall change in R(g) from the unfolded to native conformation, was observed within 300 micros after the pH jump. The collapsed intermediate has a f(H) of 33% and a globular shape that involves >80% of all its atoms. Subsequently, a stepwise helix formation was detected, which was interpreted to be associated with a conformational search for the correct tertiary contacts. The characterized folding dynamics of apoMb indicates the importance of the initial collapse event, which is suggested to facilitate the subsequent conformational search and the helix formation leading to the native structure. |
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Department of Molecular Engineering, Graduate School of Engineering, Kyoto University, Nishikyo, Kyoto 615-8510, Japan |
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0027-8424 |
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PMID:14711991 |
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Equine Behaviour @ team @ |
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3779 |
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Ballew, R.M.; Sabelko, J.; Gruebele, M. |
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Title |
Direct observation of fast protein folding: the initial collapse of apomyoglobin |
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1996 |
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Proceedings of the National Academy of Sciences of the United States of America |
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Proc. Natl. Acad. Sci. U.S.A. |
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93 |
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12 |
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5759-5764 |
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Animals; Apoproteins/*chemistry; Circular Dichroism; Horses; Kinetics; Muscle, Skeletal/chemistry; Myoglobin/*chemistry; *Protein Folding; Spectrometry, Fluorescence; Spectrophotometry, Infrared; Temperature |
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The rapid refolding dynamics of apomyoglobin are followed by a new temperature-jump fluorescence technique on a 15-ns to 0.5-ms time scale in vitro. The apparatus measures the protein-folding history in a single sweep in standard aqueous buffers. The earliest steps during folding to a compact state are observed and are complete in under 20 micros. Experiments on mutants and consideration of steady-state CD and fluorescence spectra indicate that the observed microsecond phase monitors assembly of an A x (H x G) helix subunit. Measurements at different viscosities indicate diffusive behavior even at low viscosities, in agreement with motions of a solvent-exposed protein during the initial collapse. |
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School of Chemical Sciences and Beckman Institute for Advanced Science and Technology, University of Illinois, Urbana, 61801, USA |
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0027-8424 |
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PMID:8650166 |
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Equine Behaviour @ team @ |
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3798 |
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Dubois, C.; Ricard, A. |
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Title |
Efficiency of past selection of the French Sport Horse: Selle Francais breed and suggestions for the future |
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Journal Article |
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Year |
2007 |
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Livestock Science |
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112 |
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1-2 |
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161-171 |
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Horse; Genetic trend; Selection; Jumping |
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Parameters of genetic trend of Selle Francais (SF) horse breed were studied from 1974 to 2002 and detailed since 1991 because historical BLUP animal model genetic evaluation for jumping competition was available since 1989. During this period, annual births varied from 6000 to 10,000. The annual genetic trend for show jumping was 0.055 of genetic standard deviation between 1985 and 1995 and 0.096 since 1995 without unfavourable trend for dressage (ΔG = + 0.002) and eventing (ΔG = + 0.011). The three parameters of genetic trend: the selection intensity (i = 1.95 for males, 0.48 for females), the accuracy (r = 0.66 for males, 0.60 for females), and the generation interval (L = 12.0 years for males, 11.5 for females) explained this result. Particularities were: a higher number of progeny for best sires which induced true selection intensity equal to 2.21, a new and important selection on progeny (46% births form sires tested on progeny between 2000 and 2002), a high rate of own performance test in competition for mares (45%) which induced high accuracy of mare pathway. However, demographic possibilities were not reached, the possible selection rate for male (1.5%) and females (49%) should increase genetic gain + 14% and + 11% respectively. The generation interval was too long: a better selection at first stage for males, with equal rapid test on progeny and a shorter period of reproduction, i.e. a higher number of foals per sire, should decrease the relative importance of progeny test and should decrease generation interval. The drop of mares aged more than 10 at first progeny should decrease 1.2 year generation interval without loss on accuracy. If breeders keep the same structure (test of stallion and majority of mares on their own performance), they could add new criteria (conformation, gaits...) in the breeding value estimation for SF and maintain the high genetic trend on jumping. |
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refbase @ user @ |
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3946 |
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Author |
Dubois, C.; Manfredi, E.; Ricard, A. |
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Title |
Optimization of breeding schemes for sport horses |
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Journal Article |
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Year |
2008 |
Publication |
Livestock Science |
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118 |
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1-2 |
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99-112 |
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Breeding scheme; Horse; Jumping; Optimization; Genetic trend, Multistage selection |
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A selection scheme for jumping sport horses is modelled with four stages of selection for males and one stage for females. The selection objective included three traits: conformation and gaits (CG, weighted 20%), competition jumping (CJ, weighted 60%) and a third trait (TT, weighted 20%) such as sperm quality or orthopaedic status. The first selection stage is based on knowledge of the pedigree with the aim of selecting horses suitable for CG test (at 3Â years old) and CJ test (at 5Â years old). The second stage includes the horse's own performance with respect to CG and CJ with the aim of selecting horses suitable for the TT test. The third stage is the selection of a limited number of males who are allowed to reproduce. The fourth stage (at 12Â years old) takes into account the results of the horse's progeny. Females are selected in one step, whatever the number of performances measured at 5Â years old. The annual genetic response was 9.4% genetic standard deviation of the objective, 2.6% for CG, 9.0% for CJ and 1.5% for TT. Results showed that selection by progeny testing did not contribute much to genetic response (12% of progeny issued from proven sires), the female pathway represented 26% of genetic response, TT was difficult to improve when the genetic correlation was unfavourable (-Â 0.6% genetic standard deviation for -Â 0.20 genetic correlation), and should consequently be directed towards the use of molecular markers. When compared with a selection scheme involving a station test, genetic response was the same if the breeding values used for selection before entering the station test took into account the results of the relatives for CJ and CG. This revealed the importance of an extensive performance test (like for competition performance) when designing breeding schemes for sport horses. |
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1871-1413 |
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Equine Behaviour @ team @ |
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4759 |
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Author |
Ducro, B.J.; Koenen, E.P.C.; van Tartwijk, J.M.F.M.; Bovenhuis, H. |
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Title |
Genetic relations of movement and free-jumping traits with dressage and show-jumping performance in competition of Dutch Warmblood horses |
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2007 |
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Livestock Science |
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107 |
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2-3 |
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227-234 |
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Horse; Heritability; Movement; Free-jumping; Dressage |
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Genetic parameters for traits evaluated at the studbook entry inspection and genetic correlations with dressage and show-jumping performance in competition were estimated. Data comprised 36,649 Warmblood horses that entered the studbook between 1992 and 2002. The genetic analyses were performed using univariate and bivariate animal models. Heritabilities of the studbook entry traits were estimated in the range 0.15-0.40. The movement traits showed moderate to strong mutual genetic correlations, whereas the genetic correlations of movement traits with free-jumping traits were weak to moderate. The free-jumping traits showed strong to very strong mutual genetic correlations. Competition results of 33,459 horses with performance in dressage and 30,474 horse with performance in show-jumping were linked to the studbook entry data to estimate the genetic relationship with performance in competition. Heritability estimates for dressage and show jumping were 0.14. Genetic correlations of the movement traits with dressage were moderate to strong, and with show-jumping weak to moderate. Genetic correlations of the free-jumping traits with dressage were weak to moderate and unfavourable. The free-jumping traits were genetically strong to very strong correlated to show-jumping. It was concluded that a selection of the traits evaluated at the studbook entry inspection will favourably contribute to estimation of breeding values for sport performance. |
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refbase @ user @ |
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3947 |
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Ducro, B.J.; Koenen, E.P.C.; van Tartwijk, J.M.F.M.; van Arendonk, J.A.M. |
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Genetic relations of First Stallion Inspection traits with dressage and show-jumping performance in competition of Dutch Warmblood horses |
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2007 |
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Livestock Science |
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107 |
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1 |
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81-85 |
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Riding horse; Heritability; Stallion inspection; Dressage; Show-jumping |
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Genetic parameters for traits evaluated at the First Stallion Inspection (FSI) and genetic correlations with dressage and show-jumping performance in competition were estimated. Data comprised 2361 stallions with FSI-observations from 1994 through 1999. Genetic analyses were performed using univariate and bivariate animal models. Heritability estimates of the FSI-traits ranged from 0.25 to 0.61. FSI-traits related to gaits showed strong genetic correlations (above 0.70) and FSI-traits related to free jumping had correlations close to unity. Competition results of 23,897 horses with performance in dressage and 22,811 horses with performance in show-jumping were linked to the FSI data to estimate the genetic relationship with performance in competition. Heritability estimates for dressage and show-jumping were 0.14. Genetic correlation between FSI-gaits and dressage in competition were positive, ranging from 0.37 to 0.72. Genetic correlation between FSI-jumping traits and show-jumping were all above 0.80. FSI-jumping traits showed negative correlations with dressage (about – 0.48). FSI-gait traits showed negative correlations with show-jumping, except for canter. It is concluded that selection at First Stallion Inspection comprises an important component of the stallion selection program, because FSI-traits have good genetic relationships with performance in competition and, due to the number of animals involved, relative high selection intensities can be achieved. |
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3948 |
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Thoren Hellsten, E.; Viklund, A.; Koenen, E.P.C.; Ricard, A.; Bruns, E.; Philipsson, J. |
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Review of genetic parameters estimated at stallion and young horse performance tests and their correlations with later results in dressage and show-jumping competition |
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2006 |
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Livestock Science |
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103 |
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1-2 |
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1-12 |
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Genetic parameters; Sport horse; Performance test; Competition; Dressage; Show-jumping |
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Results from performance tests and competitions of young horses are used by major European warmblood horse breeding associations for genetic evaluations. The aim of this review was to compare genetic parameters for various tests of young horses to assess their efficiency in selection for dressage and show-jumping. Improved understanding of genetic information across countries is also necessary, as foreign trade with semen is rapidly increasing. The review is based on inquiries to European breed associations and on (17) scientific publications available, which have analysed genetic parameters of young horse data and/or relationships between young and mature horse results in sport. Despite differences in testing methods of young horses, results for major horse populations were in good agreement. Specially designed young horse performance tests, including stallion tests, showed high heritabilities and high genetic correlations with later competition results. We recommend that test results are encouraged to be used across countries for genetic evaluation of imported stallions and semen. Short station tests are generally preferred when selecting stallions for both dressage and jumping traits, whereas competition data may be used when selecting for only one discipline. We also recommend that extensive field testing of young horses is encouraged and should include both genders. |
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3951 |
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Stock, K.F.; Distl, O. |
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Prediction of breeding values for osseous fragments in fetlock and hock joints, deforming arthropathy in hock joints, and pathologic changes in the navicular bones of Hanoverian Warmblood horses |
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2005 |
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Livestock Production Science |
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92 |
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1 |
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77-94 |
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Hanoverian Warmblood horse; Radiological status; Breeding values; Response to selection |
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The results of a standardised radiological examination of 5928 Hanoverian Warmblood horses selected for sale at auction were used to predict relative breeding values (RBV) in the 23,662 horses included in the last four generations of the probands' pedigrees. The distribution of the RBV was investigated in the whole four-generation pedigree, in the probands and in those stallions that contributed at least three offspring to the probands. The RBV of the probands' sires were further compared with the officially published performance-based relative breeding values, i.e., total indices dressage (TID) and jumping (TIJ). The sires' level of dressage indices was considerably higher (mean TID=110) than of the jumping indices (mean TIJ=98). Total indices radiographic findings (TIR) were calculated for the sires with varying weighting given to the individual RBV. In each case, this resulted in a mean TIR of 99. Finally, total indices were derived from TIR and TID and/or TIJ in order to develop different selection schemes for all-purpose breeding and for breeding focused on dressage and show jumping. All breeding values under consideration increased by between 1% and 19% when radiographic findings were weighted with between 30% and 60% complementary to the corresponding performance parameters, and when only sires were selected with above average total indices. At the same time, the prevalences of the radiographic findings investigated here were lowered by up to 10% each. When only one radiographic finding was considered at a time, the maximum attainable response to selection was a 16-23% increase in the relative breeding values and a relative decrease in prevalences of radiographic findings of between 31% and 52%. The results of this study indicate that it is possible in horse breeding to consider simultaneously health and performance traits. Medical data should be included in the prediction of breeding values in order to improve the radiological status of today's riding horses. |
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3953 |
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Koenen, E.P.C.; Aldridge, L.I.; Philipsson, J. |
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An overview of breeding objectives for warmblood sport horses |
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Journal Article |
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2004 |
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Livestock Production Science |
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88 |
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1-2 |
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77-84 |
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Breeding objective; Sport horse; Sport performance; Conformation; Specialisation |
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The aim of this paper is to review the current breeding objectives of organisations that run a selection programme for warmblood riding horses in the light of an increasing trend in trade of semen across countries. In a questionnaire, 19 horse breeding organisations provided information on breeding objective traits. Variation both in length and amount of details used to define individual breeding objectives was large, reflecting that many traits in sport horse breeding are not easy to measure, and therefore, have to be defined in a subjective way. The majority of the breeding objectives included conformation, gaits and performance in show jumping and dressage. Some breeding objectives also included behaviour, soundness, health and fertility. However, several organisations did not specify the sport discipline and the level of competition (amateur, national or international level) in the breeding objective. In general, relative weightings of the traits within the verbally presented breeding objectives were not given, but were assessed by the organisations in response to this study. The relevance of more information on expected future production circumstances and on the genetic parameters of the traits of interest are discussed. A further review of the consistency, completeness and the number of traits of the present breeding objectives for sport horses is recommended to optimise the efficiency of selection decisions. |
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3954 |
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