| Records |
| Author |
Haruta, N.; Kitagawa, T. |
| Title |
Time-resolved UV resonance Raman investigation of protein folding using a rapid mixer: characterization of kinetic folding intermediates of apomyoglobin |
Type |
Journal Article |
| Year |
2002 |
Publication |
Biochemistry |
Abbreviated Journal |
Biochemistry |
| Volume |
41 |
Issue |
21 |
Pages |
6595-6604 |
| Keywords |
Animals; Apoproteins/*chemistry; Circular Dichroism; Holoenzymes/chemistry; Horses; Hydrochloric Acid/chemistry; Hydrogen-Ion Concentration; Imidazoles/chemistry; Kinetics; Models, Molecular; Myoglobin/*chemistry; Peptide Fragments/chemistry; *Protein Folding; Protein Structure, Secondary; Spectrum Analysis, Raman/*methods; Tryptophan/*chemistry; Ultraviolet Rays; Whales |
| Abstract |
The 244-nm excited transient UV resonance Raman spectra are observed for the refolding intermediates of horse apomyoglobin (h-apoMb) with a newly constructed mixed flow cell system, and the results are interpreted on the basis of the spectra observed for the equilibrium acid unfolding of the same protein. The dead time of mixing, which was determined with the appearance of UV Raman bands of imidazolium upon mixing of imidazole with acid, was 150 micros under the flow rate that was adopted. The pH-jump experiments of h-apoMb from pH 2.2 to 5.6 conducted with this device demonstrated the presence of three folding intermediates. On the basis of the analysis of W3 and W7 bands of Trp7 and Trp14, the first intermediate, formed before 250 micros, involved incorporation of Trp14 into the alpha-helix from a random coil. The frequency shift of the W3 band of Trp14 observed for this process was reproduced with a model peptide of the A helix when it forms the alpha-helix. In the second intermediate, formed around 1 ms after the start of refolding, the surroundings of both Trp7 and Trp14 were significantly hydrophobic, suggesting the formation of the hydrophobic core. In the third intermediate appearing around 3 ms, the hydrophobicity was relaxed to the same level as that of the pH 4 equilibrium intermediate, which was investigated in detail with the stationary state technique. The change from the third intermediate to the native state needs more time than 40 ms, while the appearance of the native spectrum after the mixing of the same solutions was confirmed separately. |
Address  |
School of Mathematical and Physical Sciences, The Graduate University for Advanced Studies, Myodaiji, Okazaki 444-8585, Japan |
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English |
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Edition |
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| ISSN |
0006-2960 |
ISBN |
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| Notes |
PMID:12022863 |
Approved |
no |
| Call Number |
Equine Behaviour @ team @ |
Serial |
3785 |
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| Author |
Joffe, T.H.; Dunbar, R.I. |
| Title |
Visual and socio-cognitive information processing in primate brain evolution |
Type |
Journal Article |
| Year |
1997 |
Publication |
Proceedings. Biological Sciences / The Royal Society |
Abbreviated Journal |
Proc Biol Sci |
| Volume |
264 |
Issue |
1386 |
Pages |
1303-1307 |
| Keywords |
Animals; Brain/anatomy & histology/*physiology; Cognition/physiology; *Evolution; Geniculate Bodies/anatomy & histology/physiology; Humans; Mental Processes/physiology; Neocortex/physiology; Primates/anatomy & histology/*physiology/*psychology; *Social Behavior; Visual Cortex/anatomy & histology/physiology |
| Abstract |
Social group size has been shown to correlate with neocortex size in primates. Here we use comparative analyses to show that social group size is independently correlated with the size of non-V1 neocortical areas, but not with other more proximate components of the visual system or with brain systems associated with emotional cueing (e.g. the amygdala). We argue that visual brain components serve as a social information 'input device' for socio-visual stimuli such as facial expressions, bodily gestures and visual status markers, while the non-visual neocortex serves as a 'processing device' whereby these social cues are encoded, interpreted and associated with stored information. However, the second appears to have greater overall importance because the size of the V1 visual area appears to reach an asymptotic size beyond which visual acuity and pattern recognition may not improve significantly. This is especially true of the great ape clade (including humans), that is known to use more sophisticated social cognitive strategies. |
| Address |
School of Life Sciences, University of Liverpool, UK |
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English |
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Edition |
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| ISSN |
0962-8452 |
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| Notes |
PMID:9332015 |
Approved |
no |
| Call Number |
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Serial |
2095 |
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| Author |
Hall, C.A.; Cassaday, H.J.; Derrington, A.M. |
| Title |
The effect of stimulus height on visual discrimination in horses |
Type |
Journal Article |
| Year |
2003 |
Publication |
Journal of Animal Science |
Abbreviated Journal |
J. Anim Sci. |
| Volume |
81 |
Issue |
7 |
Pages |
1715-1720 |
| Keywords |
Animals; *Discrimination Learning/physiology; Female; Horses/physiology/*psychology; Male; Orientation; *Photic Stimulation; Vision/*physiology |
| Abstract |
This study investigated the effect of stimulus height on the ability of horses to learn a simple visual discrimination task. Eight horses were trained to perform a two-choice, black/white discrimination with stimuli presented at one of two heights: ground level or at a height of 70 cm from the ground. The height at which the stimuli were presented was alternated from one session to the next. All trials within a single session were presented at the same height. The criterion for learning was four consecutive sessions of 70% correct responses. Performance was found to be better when stimuli were presented at ground level with respect to the number of trials taken to reach the criterion (P < 0.05), percentage of correct first choices (P < 0.01), and repeated errors made (P < 0.01). Thus, training horses to carry out tasks of visual discrimination could be enhanced by placing the stimuli on the ground. In addition, the results of the present study suggest that the visual appearance of ground surfaces is an important factor in both horse management and training. |
| Address |
School of Land-based Studies, Nottingham Trent University, Brackenhurst College Campus, Southwell, Nottinghamshire, England NG25 0QF. carol.hall@ntu.ac.uk |
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English |
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Edition |
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| ISSN |
0021-8812 |
ISBN |
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| Notes |
PMID:12854807 |
Approved |
no |
| Call Number |
refbase @ user @ |
Serial |
835 |
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| Author |
Ballew, R.M.; Sabelko, J.; Gruebele, M. |
| Title |
Direct observation of fast protein folding: the initial collapse of apomyoglobin |
Type |
Journal Article |
| Year |
1996 |
Publication |
Proceedings of the National Academy of Sciences of the United States of America |
Abbreviated Journal |
Proc. Natl. Acad. Sci. U.S.A. |
| Volume |
93 |
Issue |
12 |
Pages |
5759-5764 |
| Keywords |
Animals; Apoproteins/*chemistry; Circular Dichroism; Horses; Kinetics; Muscle, Skeletal/chemistry; Myoglobin/*chemistry; *Protein Folding; Spectrometry, Fluorescence; Spectrophotometry, Infrared; Temperature |
| Abstract |
The rapid refolding dynamics of apomyoglobin are followed by a new temperature-jump fluorescence technique on a 15-ns to 0.5-ms time scale in vitro. The apparatus measures the protein-folding history in a single sweep in standard aqueous buffers. The earliest steps during folding to a compact state are observed and are complete in under 20 micros. Experiments on mutants and consideration of steady-state CD and fluorescence spectra indicate that the observed microsecond phase monitors assembly of an A x (H x G) helix subunit. Measurements at different viscosities indicate diffusive behavior even at low viscosities, in agreement with motions of a solvent-exposed protein during the initial collapse. |
| Address |
School of Chemical Sciences and Beckman Institute for Advanced Science and Technology, University of Illinois, Urbana, 61801, USA |
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English |
Summary Language |
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Series Issue |
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Edition |
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| ISSN |
0027-8424 |
ISBN |
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Medium |
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Conference |
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| Notes |
PMID:8650166 |
Approved |
no |
| Call Number |
Equine Behaviour @ team @ |
Serial |
3798 |
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| Author |
Halsey, L.G.; Bezerra, B.M.; Souto, A.S. |
| Title |
Can wild common marmosets (Callithrix jacchus) solve the parallel strings task? |
Type |
Journal Article |
| Year |
2006 |
Publication |
Animal Cognition |
Abbreviated Journal |
Anim. Cogn. |
| Volume |
9 |
Issue |
3 |
Pages |
229-233 |
| Keywords |
Animals; Animals, Laboratory; Animals, Wild; Attention; Callithrix/*psychology; *Cognition; *Concept Formation; Female; Male; *Pattern Recognition, Visual; *Problem Solving |
| Abstract |
Patterned string tasks are a test of perceptual capacity and the understanding of means-end connections. Primates can solve complex forms of this task in laboratories. However, this may not indicate the level of such cognition that is commonly employed in the wild, where decision-making time is often short and distractions such as predator avoidance and competition between conspecifics are often prevalent. The current study tests whether wild common marmosets (Callithrix jacchus) can successfully complete the simplest form of the patterned string task, parallel strings, while in their natural environment. Although 12 out of 13 marmosets could successfully complete the task, in previous laboratory-based studies on primates, the errors at this task by all primate species tested were consistently lower than in the present study. This is probably explained by the added difficulties imposed by the natural setting of the task in the present study, exemplified by a significant increase in observed vigilance behaviour by subject animals prior to attempts at the task that were unsuccessful. The undertaking of such tasks by common marmosets in situ probably provides a more reasonable representation of the levels of cognitive capacity expressed by this species in the wild than do laboratory-based studies of the task. |
| Address |
School of Biosciences, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK. l.g.halsey@bham.ac.uk |
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English |
Summary Language |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
1435-9448 |
ISBN |
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| Notes |
PMID:16541239 |
Approved |
no |
| Call Number |
Equine Behaviour @ team @ |
Serial |
2473 |
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| Author |
Janik, V.M. |
| Title |
Whistle matching in wild bottlenose dolphins (Tursiops truncatus) |
Type |
Journal Article |
| Year |
2000 |
Publication |
Science (New York, N.Y.) |
Abbreviated Journal |
Science |
| Volume |
289 |
Issue |
5483 |
Pages |
1355-1357 |
| Keywords |
Animals; Animals, Wild/physiology; Dolphins/*physiology; *Imitative Behavior; *Learning; *Social Behavior; *Vocalization, Animal |
| Abstract |
Dolphin communication is suspected to be complex, on the basis of their call repertoires, cognitive abilities, and ability to modify signals through vocal learning. Because of the difficulties involved in observing and recording individual cetaceans, very little is known about how they use their calls. This report shows that wild, unrestrained bottlenose dolphins use their learned whistles in matching interactions, in which an individual responds to a whistle of a conspecific by emitting the same whistle type. Vocal matching occurred over distances of up to 580 meters and is indicative of animals addressing each other individually. |
| Address |
School of Biology, University of St. Andrews, Bute Building, Fife KY16 9TS, UK |
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English |
Summary Language |
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Edition |
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| ISSN |
0036-8075 |
ISBN |
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| Notes |
PMID:10958783 |
Approved |
no |
| Call Number |
refbase @ user @ |
Serial |
550 |
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| Author |
Shapiro, A.D.; Janik, V.M.; Slater, P.J.B. |
| Title |
A gray seal's (Halichoerus grypus) responses to experimenter-given pointing and directional cues |
Type |
Journal Article |
| Year |
2003 |
Publication |
Journal of Comparative Psychology |
Abbreviated Journal |
J Comp Psychol |
| Volume |
117 |
Issue |
4 |
Pages |
355-362 |
| Keywords |
Animals; Behavior, Animal/*physiology; Cognition/physiology; Conditioning, Operant/physiology; *Cues; Eye Movements/physiology; Female; Seals, Earless |
| Abstract |
A gray seal (Halichoerus grypus) was trained to touch a target on its left or right by responding to pointing signals. The authors then tested whether the seal would be able to generalize spontaneously to altered signals. It responded correctly to center pointing and head turning, center upper body turning, and off-center pointing but not to head turning and eye movements alone. The seal also responded correctly to brief ipsilateral and contralateral points from center and lateral positions. Pointing gestures did not cause the seal to select an object placed centrally behind it. Like many animals in similar studies, this gray seal probably did not understand the referential character of these gestures but rather used signal generalization and experience from initial operant conditioning to solve these tasks. |
| Address |
School of Biology, University of St Andrews, St Andrews, Fife, United Kingdom |
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Place of Publication |
Washington, D.C. : 1983 |
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English |
Summary Language |
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Series Issue |
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Edition |
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| ISSN |
0735-7036 |
ISBN |
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Conference |
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| Notes |
PMID:14717636 |
Approved |
yes |
| Call Number |
Equine Behaviour @ team @ |
Serial |
4977 |
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| Author |
Conradt, L.; Roper, T.J. |
| Title |
Group decision-making in animals |
Type |
Journal Article |
| Year |
2003 |
Publication |
Nature |
Abbreviated Journal |
Nature |
| Volume |
421 |
Issue |
6919 |
Pages |
155-158 |
| Keywords |
Animals; Behavior, Animal/*physiology; *Decision Making; Democracy; Group Processes; *Models, Biological; Population Density; Social Behavior |
| Abstract |
Groups of animals often need to make communal decisions, for example about which activities to perform, when to perform them and which direction to travel in; however, little is known about how they do so. Here, we model the fitness consequences of two possible decision-making mechanisms: 'despotism' and 'democracy'. We show that under most conditions, the costs to subordinate group members, and to the group as a whole, are considerably higher for despotic than for democratic decisions. Even when the despot is the most experienced group member, it only pays other members to accept its decision when group size is small and the difference in information is large. Democratic decisions are more beneficial primarily because they tend to produce less extreme decisions, rather than because each individual has an influence on the decision per se. Our model suggests that democracy should be widespread and makes quantitative, testable predictions about group decision-making in non-humans. |
| Address |
School of Biological Sciences, University of Sussex, Brighton BN1 9QG, UK. l.conradt@sussex.ac.uk |
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English |
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Edition |
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| ISSN |
0028-0836 |
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| Notes |
PMID:12520299 |
Approved |
no |
| Call Number |
Equine Behaviour @ team @ |
Serial |
5136 |
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| Author |
Jones, J.E.; Antoniadis, E.; Shettleworth, S.J.; Kamil, A.C. |
| Title |
A comparative study of geometric rule learning by nutcrackers (Nucifraga columbiana), pigeons (Columba livia), and jackdaws (Corvus monedula) |
Type |
Journal Article |
| Year |
2002 |
Publication |
Journal of comparative psychology (Washington, D.C. : 1983) |
Abbreviated Journal |
J Comp Psychol |
| Volume |
116 |
Issue |
4 |
Pages |
350-356 |
| Keywords |
Animals; Behavior, Animal/physiology; Birds; Feeding Behavior/physiology; Learning/*physiology; *Mathematics; Random Allocation; Spatial Behavior/*physiology |
| Abstract |
Three avian species, a seed-caching corvid (Clark's nutcrackers; Nucifraga columbiana), a non-seed-caching corvid (jackdaws; Corvus monedula), and a non-seed-caching columbid (pigeons; Columba livia), were tested for ability to learn to find a goal halfway between 2 landmarks when distance between the landmarks varied during training. All 3 species learned, but jackdaws took much longer than either pigeons or nutcrackers. The nutcrackers searched more accurately than either pigeons or jackdaws. Both nutcrackers and pigeons showed good transfer to novel landmark arrays in which interlandmark distances were novel, but inconclusive results were obtained from jackdaws. Species differences in this spatial task appear quantitative rather than qualitative and are associated with differences in natural history rather than phylogeny. |
| Address |
School of Biological Sciences, University of Nebraska-Lincoln, 68588-0118, USA |
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English |
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0735-7036 |
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| Notes |
PMID:12539930 |
Approved |
no |
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refbase @ user @ |
Serial |
369 |
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| Author |
Fedurek, P.; Dunbar, R. I. M. |
| Title |
What Does Mutual Grooming Tell Us About Why Chimpanzees Groom? |
Type |
Journal Article |
| Year |
2009 |
Publication |
Ethology |
Abbreviated Journal |
Ethology |
| Volume |
115 |
Issue |
6 |
Pages |
566 - 575 |
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| Abstract |
Grooming might be a resource that is offered in exchange for some benefit (e.g. access to a feeding site or coalitionary support) or it might be a mechanism for building and servicing social relationships, whose function, in turn, is to facilitate the exchange of resources and services. Bi-directional (or simultaneous mutual) grooming is unusually common among chimpanzees (though rare in other primates) and we suggest that this might be because it is an especially strong indicator of social bonding. Because the bonding role of bi-directional grooming offers substantially different predictions from the interpretation offered by the models based on reciprocal altruism (RA), we use a critical tests methodology (i.e. tests that unequivocally support one hypothesis at the expense of the other) to differentiate between the bonding and RA hypotheses. We use data on the dynamics of grooming interactions from a captive group of chimpanzees (Pan troglodytes) to show that dominant individuals tolerated the individuals with whom they performed bi-directional grooming more than they did those who typically provided them unidirectional grooming. Dominants rejected and terminated grooming sessions more often with the individuals who provided them with mostly unidirectional grooming than with those with whom they groomed bi-directionally. In addition, animals engaged in bi-directional grooming more often with both relatives and those with whom they were often in proximity. These results support the bonding model of mutually reciprocated grooming at the expense of the RA model, and suggest that, at least in chimpanzees, simultaneous mutual grooming may play a particularly important role in social bonding. |
| Address |
School of Biological Sciences, University of Liverpool, Liverpool, UK; Institute of Cognitive & Evolutionary Anthropology, University of Oxford, Oxford, UK DOI – 10.1111/j.1439-0310.2009.01637.x |
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© 2009 Blackwell Verlag GmbH |
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no |
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Equine Behaviour @ team @ |
Serial |
4941 |
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