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| Author |
Murphy, M.A.; Waits, L.P.; Kendall, K.C.; Wasser, S.K.; Higbee, J.A.; Bogden, R. |
| Title |
An evaluation of long-term preservation methods for brown bear (Ursus arctos) faecal DNA samples |
Type |
Journal Article |
| Year |
2002 |
Publication |
Conservation Genetics |
Abbreviated Journal  |
Conservat. Genet. |
| Volume |
3 |
Issue |
4 |
Pages |
435-440 |
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| Abstract |
Relatively few large-scale faecal DNA studieshave been initiated due to difficulties inamplifying low quality and quantity DNAtemplate. To improve brown bear faecal DNA PCRamplification success rates and to determinepost collection sample longevity, fivepreservation methods were evaluated: 90%ethanol, DETs buffer, silica-dried, oven-driedstored at room temperature, and oven-driedstored at -20 °C. Preservationeffectiveness was evaluated for 50 faecalsamples by PCR amplification of a mitochondrialDNA (mtDNA) locus (~146 bp) and a nuclear DNA(nDNA) locus (~200 bp) at time points of oneweek, one month, three months and six months. Preservation method and storage timesignificantly impacted mtDNA and nDNAamplification success rates. For mtDNA, allpreservation methods had >= 75% success atone week, but storage time had a significantimpact on the effectiveness of the silicapreservation method. Ethanol preserved sampleshad the highest success rates for both mtDNA(86.5%) and nDNA (84%). Nuclear DNAamplification success rates ranged from 26-88%, and storage time had a significant impacton all methods but ethanol. Preservationmethod and storage time should be importantconsiderations for researchers planningprojects utilizing faecal DNA. We recommendpreservation of faecal samples in 90% ethanolwhen feasible, although when collecting inremote field conditions or for both DNA andhormone assays a dry collection method may beadvantageous. |
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1572-9737 |
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Equine Behaviour @ team @ Murphy2002 |
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6574 |
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George, I.; Cousillas, H.; Richard, J.-P.; Hausberger, M. |
| Title |
Song perception in the European starling: hemispheric specialisation and individual variations |
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Journal Article |
| Year |
2002 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
Compt. Rend. Biol. |
| Volume |
325 |
Issue |
3 |
Pages |
197-204 |
| Keywords |
lateralisation; perception; birdsong; starling; electrophysiology; individual variations; latéralisation; perception; chant; étourneaux; électrophysiologie; variations individuelles |
| Abstract |
Hemispheric specialisation for speech in humans has been well documented. The lateralisation for song production observed in songbirds is reminiscent of this hemispheric dominance. In order to investigate whether song perception is also lateralised, we made multiunit recordings of the neuronal activity in the field L of starlings during the presentation of species-specific and artificial non-specific sounds. We observed a systematic stronger activation in one hemisphere than in the other one during the playback of species-specific sounds, with inter-subject variability in the predominant hemisphere for song perception. Such an asymmetry was not observed for artificial non-specific sounds. Thus, our results suggest that, at least at the individual level, the two hemispheres of the starlings' brain perceive and process conspecific signals differently. |
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Equine Behaviour @ team @ |
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4636 |
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Pepperberg, I.M. |
| Title |
In search of king Solomon's ring: cognitive and communicative studies of Grey parrots (Psittacus erithacus) |
Type |
Journal Article |
| Year |
2002 |
Publication |
Brain, behavior and evolution |
Abbreviated Journal |
Brain Behav Evol |
| Volume |
59 |
Issue |
1-2 |
Pages |
54-67 |
| Keywords |
*Animal Communication; Animals; Attention/physiology; Cognition/*physiology; Cues; Form Perception/physiology; Humans; Intelligence; Learning/physiology; Male; Models, Psychological; Parrots/*physiology; Psychomotor Performance/physiology; Reward; Social Behavior |
| Abstract |
During the past 24 years, I have used a modeling technique (M/R procedure) to train Grey parrots to use an allospecific code (English speech) referentially; I then use the code to test their cognitive abilities. The oldest bird, Alex, labels more than 50 different objects, 7 colors, 5 shapes, quantities to 6, 3 categories (color, shape, material) and uses 'no', 'come here', wanna go X' and 'want Y' (X and Y are appropriate location or item labels). He combines labels to identify, request, comment upon or refuse more than 100 items and to alter his environment. He processes queries to judge category, relative size, quantity, presence or absence of similarity/difference in attributes, and show label comprehension. He semantically separates labeling from requesting. He thus exhibits capacities once presumed limited to humans or nonhuman primates. Studies on this and other Greys show that parrots given training that lacks some aspect of input present in M/R protocols (reference, functionality, social interaction) fail to acquire referential English speech. Examining how input affects the extent to which parrots acquire an allospecific code may elucidate mechanisms of other forms of exceptional learning: learning unlikely in the normal course of development but that can occur under certain conditions. |
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The MIT Media Lab, Cambridge, Mass. 02139, USA. impepper@media.mit.edu |
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0006-8977 |
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PMID:12097860 |
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refbase @ user @ |
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579 |
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Marino, L. |
| Title |
Convergence of complex cognitive abilities in cetaceans and primates |
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Journal Article |
| Year |
2002 |
Publication |
Brain, Behavior and Evolution |
Abbreviated Journal |
Brain Behav Evol |
| Volume |
59 |
Issue |
1-2 |
Pages |
21-32 |
| Keywords |
Animal Communication; Animals; Brain/physiology; Cerebral Cortex/physiology; Cetacea/*physiology; Cognition/*physiology; *Evolution; Humans; Intelligence; Primates/*physiology |
| Abstract |
What examples of convergence in higher-level complex cognitive characteristics exist in the animal kingdom? In this paper I will provide evidence that convergent intelligence has occurred in two distantly related mammalian taxa. One of these is the order Cetacea (dolphins, whales and porpoises) and the other is our own order Primates, and in particular the suborder anthropoid primates (monkeys, apes, and humans). Despite a deep evolutionary divergence, adaptation to physically dissimilar environments, and very different neuroanatomical organization, some primates and cetaceans show striking convergence in social behavior, artificial 'language' comprehension, and self-recognition ability. Taken together, these findings have important implications for understanding the generality and specificity of those processes that underlie cognition in different species and the nature of the evolution of intelligence. |
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Neuroscience and Behavioral Biology Program, Emory University, Atlanta, Ga. 30322, USA. lmarino@emory.edu |
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0006-8977 |
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PMID:12097858 |
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no |
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Equine Behaviour @ team @ |
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4158 |
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Orbell, J.; Morikawa, T.; Allen,N. |
| Title |
The Evolution of Political Intelligence: Simulation Results |
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Journal Article |
| Year |
2002 |
Publication |
British Journal of Political Science |
Abbreviated Journal |
Br. J. Polit. Sci. |
| Volume |
32 |
Issue |
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Pages |
613-639 |
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| Abstract |
Several bodies of theory develop the idea that the intelligence of highly social animals – most interestingly, humans is significantly organized around the adaptive problems posed by their sociality. By this “political intelligence” hypothesis, sociality selects for, among other attributes, capacities for “manipulating” information others can gather about one's own future behaviour, and for “mindreading” such manipulations by others. Yet we have little theory about how diverse parameters of the games that social animals play select for political intelligence. We begin to address that with an evolutionary simulation in which agents choose between playing Prisoner's Dilemma and Hawk-Dove games on the basis of the information they can retrieve about each other given four broad information processing capacities. We show that political intelligence – operationally, the aggregate of those four capacities evolves to its highest levels when co-operative games are generally more attractive than conflictual ones, but when conflictual games are at least sometimes also attractive. |
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Cambridge University Press |
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609 |
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Hemelrijk, C.K. |
| Title |
Self-Organization and Natural Selection in the Evolution of Complex Despotic Societies |
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Journal Article |
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2002 |
Publication |
Biol Bull |
Abbreviated Journal |
Biol Bull |
| Volume |
202 |
Issue |
3 |
Pages |
283-288 |
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Differences between related species are usually explained as separate adaptations produced by individual selection. I discuss in this paper how related species, which differ in many respects, may evolve by a combination of individual selection, self-organization, and group-selection, requiring an evolutionary adaptation of only a single trait. In line with the supposed evolution of despotic species of macaques, we take as a starting point an ancestral species that is egalitarian and mildly aggressive. We suppose it to live in an environment with abundant food and we put the case that, if food becomes scarce and more clumped, natural selection at the level of the individual will favor individuals with a more intense aggression (implying, for instance, biting and fierce fighting). Using an individual-centered model, called DomWorld, I show what happens when the intensity of aggression increases. In DomWorld, group life is represented by artificial individuals that live in a homogeneous world. Individuals are extremely simple: all they do is flock together and, upon meeting one another, they may perform dominance interactions in which the effects of winning and losing are self-reinforcing. When the intensity of aggression in the model is increased, a complex feedback between the hierarchy and spatial structure results; via self-organization, this feedback causes the egalitarian society to change into a despotic one. The many differences between the two types of artificial society closely correspond to those between despotic and egalitarian macaques in the real world. Given that, in the model, the organization changes as a side effect of the change of one single trait proper to an egalitarian society, in the real world a despotic society may also have arisen as a side effect of the mutation of a single trait of an egalitarian species. If groups with different intensities of aggression evolve in this way, they will also have different gradients of hierarchy. When food is scarce, groups with the steepest hierarchy may have the best chance to survive, because at least a small number of individuals in such a group may succeed in producing offspring, whereas in egalitarian societies every individual is at risk of being insufficiently fed to reproduce. Therefore, intrademic group selection (selection within an interbreeding group) may have contributed to the evolution of despotic societies. N1 - |
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Equine Behaviour @ team @ |
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5201 |
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Parrish, J.K.; Viscido, S.V.; Grunbaum, D. |
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Self-Organized Fish Schools: An Examination of Emergent Properties |
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Journal Article |
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2002 |
Publication |
Biol Bull |
Abbreviated Journal |
Biol Bull |
| Volume |
202 |
Issue |
3 |
Pages |
296-305 |
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Heterogeneous, “aggregated” patterns in the spatial distributions of individuals are almost universal across living organisms, from bacteria to higher vertebrates. Whereas specific features of aggregations are often visually striking to human eyes, a heuristic analysis based on human vision is usually not sufficient to answer fundamental questions about how and why organisms aggregate. What are the individual-level behavioral traits that give rise to these features? When qualitatively similar spatial patterns arise from purely physical mechanisms, are these patterns in organisms biologically significant, or are they simply epiphenomena that are likely characteristics of any set of interacting autonomous individuals? If specific features of spatial aggregations do confer advantages or disadvantages in the fitness of group members, how has evolution operated to shape individual behavior in balancing costs and benefits at the individual and group levels? Mathematical models of social behaviors such as schooling in fishes provide a promising avenue to address some of these questions. However, the literature on schooling models has lacked a common framework to objectively and quantitatively characterize relationships between individual-level behaviors and group-level patterns. In this paper, we briefly survey similarities and differences in behavioral algorithms and aggregation statistics among existing schooling models. We present preliminary results of our efforts to develop a modeling framework that synthesizes much of this previous work, and to identify relationships between behavioral parameters and group-level statistics. N1 - |
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Equine Behaviour @ team @ |
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5254 |
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Seeley, T.D. |
| Title |
When Is Self-Organization Used in Biological Systems? |
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Journal Article |
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2002 |
Publication |
Biol Bull |
Abbreviated Journal |
Biol Bull |
| Volume |
202 |
Issue |
3 |
Pages |
314-318 |
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Self-organization, or decentralized control, is widespread in biological systems, including cells, organisms, and groups. It is not, however, the universal means of organization. I argue that a biological system will be self-organized when it possesses a large number of subunits, and these subunits lack either the communicational abilities or the computational abilities, or both, that are needed to implement centralized control. Such control requires a well informed and highly intelligent supervisor. I stress that the subunits in a self-organized system do not necessarily have low cognitive abilities. A lack of preadaptations for evolving a system-wide communication network can prevent the evolution of centralized control. Hence, sometimes even systems whose subunits possess high cognitive abilities will be self-organized. N1 - |
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Equine Behaviour @ team @ |
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5257 |
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Haruta, N.; Kitagawa, T. |
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Time-resolved UV resonance Raman investigation of protein folding using a rapid mixer: characterization of kinetic folding intermediates of apomyoglobin |
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Journal Article |
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2002 |
Publication |
Biochemistry |
Abbreviated Journal |
Biochemistry |
| Volume |
41 |
Issue |
21 |
Pages |
6595-6604 |
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Animals; Apoproteins/*chemistry; Circular Dichroism; Holoenzymes/chemistry; Horses; Hydrochloric Acid/chemistry; Hydrogen-Ion Concentration; Imidazoles/chemistry; Kinetics; Models, Molecular; Myoglobin/*chemistry; Peptide Fragments/chemistry; *Protein Folding; Protein Structure, Secondary; Spectrum Analysis, Raman/*methods; Tryptophan/*chemistry; Ultraviolet Rays; Whales |
| Abstract |
The 244-nm excited transient UV resonance Raman spectra are observed for the refolding intermediates of horse apomyoglobin (h-apoMb) with a newly constructed mixed flow cell system, and the results are interpreted on the basis of the spectra observed for the equilibrium acid unfolding of the same protein. The dead time of mixing, which was determined with the appearance of UV Raman bands of imidazolium upon mixing of imidazole with acid, was 150 micros under the flow rate that was adopted. The pH-jump experiments of h-apoMb from pH 2.2 to 5.6 conducted with this device demonstrated the presence of three folding intermediates. On the basis of the analysis of W3 and W7 bands of Trp7 and Trp14, the first intermediate, formed before 250 micros, involved incorporation of Trp14 into the alpha-helix from a random coil. The frequency shift of the W3 band of Trp14 observed for this process was reproduced with a model peptide of the A helix when it forms the alpha-helix. In the second intermediate, formed around 1 ms after the start of refolding, the surroundings of both Trp7 and Trp14 were significantly hydrophobic, suggesting the formation of the hydrophobic core. In the third intermediate appearing around 3 ms, the hydrophobicity was relaxed to the same level as that of the pH 4 equilibrium intermediate, which was investigated in detail with the stationary state technique. The change from the third intermediate to the native state needs more time than 40 ms, while the appearance of the native spectrum after the mixing of the same solutions was confirmed separately. |
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School of Mathematical and Physical Sciences, The Graduate University for Advanced Studies, Myodaiji, Okazaki 444-8585, Japan |
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0006-2960 |
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PMID:12022863 |
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Equine Behaviour @ team @ |
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3785 |
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Hemelrijk, C.K. |
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Despotic societies, sexual attraction and the emergence of male 'tolerance': an agent-based model |
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Journal Article |
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2002 |
Publication |
Behaviour |
Abbreviated Journal |
Behaviour |
| Volume |
139 |
Issue |
6 |
Pages |
729-747 |
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| Abstract |
During the period when females are sexually attractive – but only then – males of certain species of primates, such as chimpanzees, allow females access to resources. Because males are usually dominant over females, such male 'tolerance' is explained as a special, reproductive strategy to gain access to females. In this paper a simpler hypothesis is proposed on the basis of an individual-based model (called DomWorld): male 'tolerance' towards females arises in 'despotic' artificial societies as a kind of 'respectful timidity', because sexual attraction automatically increases female dominance over males as a side-effect. The model consists in a homogeneous, virtual world with agents that group and perform dominance-interactions in which the effects of victory and defeat are self-reinforcing. The artificial sexes differ in that VirtualMales have a higher intensity of aggression, they start with a greater capacity to win conflicts than VirtualFemales and they are especially attracted to the opposite sex during certain periods, whereas VirtualFemales are not. I shall explain how the introduction into DomWorld of the attraction of VirtualMales by VirtualFemales leads to female dominance, why it does so only in despotic, but not in egalitarian societies, and how it leads to other phenomena that are relevant to the study of primate behaviour. |
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refbase @ user @ |
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