Records |
Author |
Machmoum, M.; Badaoui, B.; Petit, D.; Germot, A.; El Alaoui, M.A.; Boujenane, I.; Piro, M. |
Title |
Genetic Diversity and Maternal Phylogenetic Relationships among Populations and Strains of Arabian Show Horses |
Type |
Journal Article |
Year |
2023 |
Publication |
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Abbreviated Journal |
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Volume |
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Issue |
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Pages |
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Keywords |
genetic variability; whole D-loop mitochondrial DNA; desert-bred; straight Egyptian; Polish Arabian; traditional Arabian horse classification |
Abstract |
Genetic diversity and phylogenetic relationships within the Arabian show horse populations are of particular interest to breeders worldwide. Using the complete mitochondrial DNA D-loop sequence (916 pb), this study aimed (i) to understand the genetic relationship between three populations, the Desert-Bred (DB), a subset of the Kingdom of Saudi Arabia (KSA), United Arab Emirates (UAE) and Bahrain (BAH), the Straight Egyptian (EG) and the Polish bloodline (PL), and (ii) to assess the accuracy of the traditional strain classification system based on maternal lines, as stated by the Bedouin culture. To that end, we collected 211 hair samples from stud farms renowned for breeding Arabian show horses from Nejd KSA, Bahrain, Egypt, Qatar, Morocco, UAE, and Poland. The phylogenetic and network analyses of the whole mitochondrial DNA D-loop sequence highlighted a great genetic diversity among the Arabian horse populations, in which about 75% of variance was assigned to populations and 25% to strains. The discriminant analysis of principal components illustrated a relative distinction between those populations. A clear subdivision between traditional strains was found in PL, in contrast to the situation of DB and EG populations. However, several Polish horse individuals could not be traced back to the Bedouin tribes by historical documentation and were shown to differ genetically from other studied Bedouin strains, hence motivating extended investigations. |
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Series Title |
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Abbreviated Series Title |
Animals |
Series Volume |
13 |
Series Issue |
12 |
Edition |
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ISSN |
2076-2615 |
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Call Number |
Equine Behaviour @ team @ |
Serial |
6709 |
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Author |
Piro, M.; Benjouad, A.; Karom, A.; Nabich, A.; Benbihi, N.; El Allali, K.; Machmoum, M.; Ouragh, L. |
Title |
Genetic Structure of Severe Combined Immunodeficiency Carrier Horses in Morocco Inferred by Microsatellite Data |
Type |
Journal Article |
Year |
2011 |
Publication |
Journal of Equine Veterinary Science |
Abbreviated Journal |
J. Equine Vet. Sci. |
Volume |
31 |
Issue |
11 |
Pages |
618-624 |
Keywords |
Scid; Arab horses; Arab-Barb horses; Microsatellite; Dna; Genetic structure |
Abstract |
A total of 17 microsatellite deoxyribonucleic acid loci used routinely for horse parentage control were used to evaluate genetic diversity among normal Arabian horses and severe combined immunodeficiency (SCID) carrier Arabian horses (ArS) and normal Arab-Barb horses and SCID carrier Arab-Barb horses (ArbeS). On the basis of the genotype of 186 horses, mean allelic diversity was estimated as 6.82, 5.53, and 6.7059 in normal Arabian horses, ArS, and for both groups of Arab-Barb horses, respectively. Five specific alleles were observed in ArS and ArbeS, with one common with ArS at HMS6, whereas five alleles common between ArS and ArbeS had a high frequency. Expected and observed heterozygosity showed great heterogeneity in the population studied and were similar or higher when compared with other studies on Arabian horses. Coefficient of gene differentiation Gst of Nei associated with Nei's genetic distance and multivariate correspondence analysis indicated a possible differentiation between the studied populations when analyzed separately according to breed. Probability of assignment of a horse to a specific group was assessed using a full and partial Bayesian approach. In all, 80.6% of Arab horses and 78.2% of Arab-Barb horses were assigned properly with a partial Bayesian test, which provided better results than the full one. These findings will be useful for identification of SCID carrier horses by using the microsatellite deoxyribonucleic acid loci used routinely for horse parentage control in our laboratory. |
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Series Editor |
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Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0737-0806 |
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no |
Call Number |
Equine Behaviour @ team @ |
Serial |
6657 |
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Author |
Ishida, N.; Oyunsuren, T.; Mashima, S.; Mukoyama, H.; Saitou, N. |
Title |
Mitochondrial DNA sequences of various species of the genus Equus with special reference to the phylogenetic relationship between Przewalskii's wild horse and domestic horse |
Type |
Journal Article |
Year |
1995 |
Publication |
Journal of Molecular Evolution |
Abbreviated Journal |
J Mol Evol |
Volume |
41 |
Issue |
2 |
Pages |
180-188 |
Keywords |
Animals; Base Sequence; Chromosomes; Conserved Sequence/genetics; DNA, Mitochondrial/*genetics; Evolution; Genetic Variation/*genetics; Horses/*genetics; Molecular Sequence Data; *Phylogeny; RNA, Transfer, Pro/genetics; Sequence Alignment; Sequence Analysis, DNA |
Abstract |
The noncoding region between tRNAPro and the large conserved sequence block is the most variable region in the mammalian mitochondrial DNA D-loop region. This variable region (ca. 270 bp) of four species of Equus, including Mongolian and Japanese native domestic horses as well as Przewalskii's (or Mongolian) wild horse, were sequenced. These data were compared with our recently published Thoroughbred horse mitochondrial DNA sequences. The evolutionary rate of this region among the four species of Equus was estimated to be 2-4 x 10(-8) per site per year. Phylogenetic trees of Equus species demonstrate that Przewalskii's wild horse is within the genetic variation among the domestic horse. This suggests that the chromosome number change (probably increase) of the Przewalskii's wild horse occurred rather recently. |
Address |
Laboratory of Molecular and Cellular Biology, Japan Racing Association, Tokyo |
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Language |
English |
Summary Language |
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Original Title |
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Series Editor |
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Series Title |
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Abbreviated Series Title |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0022-2844 |
ISBN |
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Medium |
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Area |
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Expedition |
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Conference |
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Notes |
PMID:7666447 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
5042 |
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Author |
Oakenfull, E.A.; Ryder, O.A. |
Title |
Mitochondrial control region and 12S rRNA variation in Przewalski's horse (Equus przewalskii) |
Type |
Journal Article |
Year |
1998 |
Publication |
Animal Genetics |
Abbreviated Journal |
Anim Genet |
Volume |
29 |
Issue |
6 |
Pages |
456-459 |
Keywords |
Animals; DNA, Mitochondrial/*genetics; Female; *Genetic Variation; Horses/*genetics; Male; Pedigree; RNA, Ribosomal/*genetics |
Abstract |
Variation in the control region and the 12S rRNA gene of all surviving mitochondrial lineages of Przewalski's horse was investigated. Variation is low despite the present day population being descended from 13 individuals probably representing animals from three different regions of its range. Phylogenetic comparison of these sequences, with sequences for the domestic horse, does not resolve the ancestral status of either horse. |
Address |
Center for Reproduction of Endangered Species, Zoological Society of San Diego, CA 92112, USA |
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English |
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Series Volume |
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Series Issue |
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Edition |
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ISSN |
0268-9146 |
ISBN |
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Conference |
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Notes |
PMID:9883508 |
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no |
Call Number |
Equine Behaviour @ team @ |
Serial |
5040 |
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Author |
Wallner, B.; Brem, G.; Muller, M.; Achmann, R. |
Title |
Fixed nucleotide differences on the Y chromosome indicate clear divergence between Equus przewalskii and Equus caballus |
Type |
Journal Article |
Year |
2003 |
Publication |
Animal Genetics |
Abbreviated Journal |
Anim Genet |
Volume |
34 |
Issue |
6 |
Pages |
453-456 |
Keywords |
Animals; Base Sequence; DNA, Mitochondrial/genetics; Genetic Variation/*genetics; Horses/classification/*genetics; Male; Molecular Sequence Data; Phylogeny; Probability; Species Specificity; Y Chromosome/*genetics |
Abstract |
The phylogenetic relationship between Equus przewalskii and E. caballus is often a matter of debate. Although these taxa have different chromosome numbers, they do not form monophyletic clades in a phylogenetic tree based on mtDNA sequences. Here we report sequence variation from five newly identified Y chromosome regions of the horse. Two fixed nucleotide differences on the Y chromosome clearly display Przewalski's horse and domestic horse as sister taxa. At both positions the Przewalski's horse haplotype shows the ancestral state, in common with the members of the zebra/ass lineage. We discuss the factors that may have led to the differences in mtDNA and Y-chromosomal observations. |
Address |
Institut fur Tierzucht und Genetik, Veterinarmedizinische Universitat Wien, Veterinarplatz, Wien, Austria. wallner@i122server.vu-wien.ac.at |
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English |
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Edition |
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ISSN |
0268-9146 |
ISBN |
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Conference |
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Notes |
PMID:14687077 |
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no |
Call Number |
Equine Behaviour @ team @ |
Serial |
5038 |
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Author |
Kavar, T.; Dovc, P. |
Title |
Domestication of the horse: Genetic relationships between domestic and wild horses |
Type |
Journal Article |
Year |
2008 |
Publication |
Livestock Science |
Abbreviated Journal |
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Volume |
116 |
Issue |
1-3 |
Pages |
1-14 |
Keywords |
Equus caballus; Domestication; Mitochondrial DNA (mtDNA); Y chromosome markers |
Abstract |
To date, a large amount of equine genetic data has been obtained regarding (i) extant domestic horses of various breeds from all over the world, (ii) ancient domestic horses, (iii) the extant Przewalski's wild horse, and (iv) the late Pleistocene wild horse from Eurasia and North America. Here, a review of mtDNA and Y chromosome marker analyses is presented in the context of horse domestication. High matrilineal (mtDNA) diversity, which can be found in both extant and ancient (domestic and wild) horses, has suggested that a high number of wild (and tamed) mares were domesticated. Alternatively, Y chromosome marker analysis revealed a single haplotype in all domestic horses analyzed; interestingly even a small population of extant Przewalski's wild horses showed two different Y chromosome haplotypes. It seems that an extreme male population bottleneck occurred due to domestication, while reduction in the female population was only moderate, leaving about 100 distinct haplotypes. For this reason, we speculate that domestication might have started when the appropriate stallion was found or was obtained by selection. Perhaps it had some unusual but special characteristics which could have accelerated the process of domestication. We doubt that only a single Y chromosome haplotype will be found in present-day domestic horses if there are no important differences between the founder stallion/s and the other stallions that were not included in the domestication. In the Eneolithic, tamed and wild mares have probably been spread all over Eurasia, although the number of animals was most likely very low and the populations were limited to a restricted area (e.g., taming centers). Only two subspecies of wild horses (Tarpan and Przewalski's wild horse) have survived up to recently. During the further process of domestication, mares (tamed or wild) were preferentially crossed to stallions having more desirable characteristics. We assume that mares from different regions varied in their morphology due to adaptation to their local environmental conditions. These data might explain rapid expansion of horse populations, as well as their rapid differentiation into various phenotypes during the early phase of domestication. |
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Edition |
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ISSN |
1871-1413 |
ISBN |
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no |
Call Number |
Equine Behaviour @ team @ |
Serial |
4771 |
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Author |
Feh, C.; Munkhtuya, B. |
Title |
Male infanticide and paternity analyses in a socially natural herd of Przewalski`s horses: Sexual selection? |
Type |
Journal Article |
Year |
2008 |
Publication |
Behavioural Processes |
Abbreviated Journal |
Behav. Process. |
Volume |
78 |
Issue |
3 |
Pages |
335-339 |
Keywords |
DNA paternity analysis; Human disturbance; Male infanticide; Przewalski's horse (Equus ferus przewalskii); Sexual selection |
Abstract |
The sexual selection hypothesis explains infanticide by males in many mammals. In our 11-year study, we investigated this hypothesis in a herd of Przewalski's horses where we had witnessed infanticidal attacks. Infanticide was highly conditional and not simply linked to takeovers. Attacks occurred in only five of 39 cases following a takeover, and DNA paternity revealed that, although infanticidal stallions were not the genetic fathers in four cases out of five, stallions present at birth did not significantly attempt to kill unrelated foals. Infanticide did not reduce birth intervals; only in one case out of five was the infanticidal stallion, the father of the next foal; mothers whose foals were attacked subsequently avoided associating with infanticidal stallions. Therefore, evidence for the sexual selection hypothesis was weak. The “human disturbance” hypothesis received some support, as only zoo bred stallions which grew up in unnatural social groups attacked foals of mares which were pregnant during takeovers. |
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Equine Behaviour @ team @ |
Serial |
4632 |
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Author |
Yokoyama, S.; Radlwimmer, F.B. |
Title |
The molecular genetics of red and green color vision in mammals |
Type |
Journal Article |
Year |
1999 |
Publication |
Genetics |
Abbreviated Journal |
Genetics |
Volume |
153 |
Issue |
2 |
Pages |
919-932 |
Keywords |
Amino Acid Sequence; Animals; Base Sequence; COS Cells; Cats; Color Perception/*genetics; DNA Primers; Deer; Dolphins; *Evolution, Molecular; Goats; Guinea Pigs; Horses; Humans; Mammals/*genetics/physiology; Mice; Molecular Sequence Data; Opsin/biosynthesis/chemistry/*genetics; *Phylogeny; Rabbits; Rats; Recombinant Proteins/biosynthesis; Reverse Transcriptase Polymerase Chain Reaction; Sciuridae; Sequence Alignment; Sequence Homology, Amino Acid; Transfection |
Abstract |
To elucidate the molecular mechanisms of red-green color vision in mammals, we have cloned and sequenced the red and green opsin cDNAs of cat (Felis catus), horse (Equus caballus), gray squirrel (Sciurus carolinensis), white-tailed deer (Odocoileus virginianus), and guinea pig (Cavia porcellus). These opsins were expressed in COS1 cells and reconstituted with 11-cis-retinal. The purified visual pigments of the cat, horse, squirrel, deer, and guinea pig have lambdamax values at 553, 545, 532, 531, and 516 nm, respectively, which are precise to within +/-1 nm. We also regenerated the “true” red pigment of goldfish (Carassius auratus), which has a lambdamax value at 559 +/- 4 nm. Multiple linear regression analyses show that S180A, H197Y, Y277F, T285A, and A308S shift the lambdamax values of the red and green pigments in mammals toward blue by 7, 28, 7, 15, and 16 nm, respectively, and the reverse amino acid changes toward red by the same extents. The additive effects of these amino acid changes fully explain the red-green color vision in a wide range of mammalian species, goldfish, American chameleon (Anolis carolinensis), and pigeon (Columba livia). |
Address |
Department of Biology, Syracuse University, Syracuse, New York 13244, USA. syokoyam@mailbox.syr.edu |
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English |
Summary Language |
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ISSN |
0016-6731 |
ISBN |
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Notes |
PMID:10511567 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
4063 |
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Author |
Birch, H.L.; Bailey, A.J.; Goodship, A.E. |
Title |
Macroscopic 'degeneration' of equine superficial digital flexor tendon is accompanied by a change in extracellular matrix composition |
Type |
Journal Article |
Year |
1998 |
Publication |
Equine Veterinary Journal |
Abbreviated Journal |
Equine Vet J |
Volume |
30 |
Issue |
6 |
Pages |
534-539 |
Keywords |
Animals; Collagen/analysis; DNA/analysis; Extracellular Matrix/*chemistry; Glycosaminoglycans/analysis; Horses/injuries/*physiology; Immunohistochemistry; Rupture/veterinary; Tendon Injuries/metabolism/pathology/veterinary; Tendons/chemistry/*pathology; Water/analysis |
Abstract |
Injuries to the superficial digital flexor tendon are common in horses required to gallop and jump at speed. Partial rupture of this tendon usually occurs in the central core of the midmetacarpal region and may be preceded by localised degenerative changes. Post mortem examination of apparently normal equine flexor tendons has revealed an abnormal macroscopic appearance in the central core, characterised by a reddish discolouration. We have previously shown that there is also physical damage to the collagen fibres. In the present study we tested the hypothesis that the abnormal appearance is accompanied by changes in the composition of the extracellular matrix of the tendon. Biochemical analysis of the extracellular matrix demonstrated an increase in total sulphated glycosaminoglycan content, increase in the proportion of type III collagen and decrease in collagen linked fluorescence in the central core of 'degenerated' tendons relative to tissue from the peripheral region of the same tendon. Dry matter content and total collagen content were not significantly different between tendon zones or normal and 'degenerated' tendons. These changes suggest a change in cell metabolism and matrix turnover in the central core of the tendon and are likely to contribute to a decrease in mechanical properties in this part of the tendon, predisposing to the characteristic partial rupture of the tendon. |
Address |
Veterinary Basic Sciences, Royal Veterinary College, North Mymms, Hatfield, UK |
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English |
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Edition |
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ISSN |
0425-1644 |
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Notes |
PMID:9844973 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
3794 |
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Author |
Cilnis, M.J.; Kang, W.; Weaver, S.C. |
Title |
Genetic conservation of Highlands J viruses |
Type |
Journal Article |
Year |
1996 |
Publication |
Virology |
Abbreviated Journal |
Virology |
Volume |
218 |
Issue |
2 |
Pages |
343-351 |
Keywords |
Alphavirus/*genetics; Alphavirus Infections/transmission/veterinary/virology; Amino Acid Sequence; Animals; Base Sequence; Conserved Sequence; Disease Outbreaks; Encephalitis, Viral/veterinary/virology; *Evolution, Molecular; Horses; Molecular Sequence Data; Phylogeny; RNA, Viral/genetics; Sequence Alignment; Sequence Analysis, DNA; Sequence Homology, Nucleic Acid; Turkeys; Variation (Genetics)/*genetics |
Abstract |
We studied molecular evolution of the mosquito-borne alphavirus Highlands J (HJ) virus by sequencing PCR products generated from 19 strains isolated between 1952 and 1994. Sequences of 1200 nucleotides including portions of the E1 gene and the 3' untranslated region revealed a relatively slow evolutionary rate estimated at 0.9-1.6 x 10(-4) substitutions per nucleotide per year. Phylogenetic trees indicated that all HJ viruses descended from a common ancestor and suggested the presence of one dominant lineage in North America. However, two or more minor lineages probably circulated simultaneously for periods of years to a few decades. Strains isolated from a horse suffering encephalitis, and implicated in a recent turkey outbreak, were not phylogenetically distinct from strains isolated in other locations during the same time periods. Our findings are remarkably similar to those we obtained previously for another North American alphavirus, eastern equine encephalomyelitis virus, with which Highlands J shares primary mosquito and avian hosts, geographical distribution, and ecology. These results support the hypotheses that the duration of the transmission season affects arboviral evolutionary rates and vertebrate host mobility influences genetic diversity. |
Address |
Department of Biology, University of California, San Diego, La Jolla 92093-0116, USA |
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English |
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Edition |
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ISSN |
0042-6822 |
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Notes |
PMID:8610461 |
Approved |
no |
Call Number |
Equine Behaviour @ team @ |
Serial |
2657 |
Permanent link to this record |