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	Author	Hagen, S.J.; Eaton, W.A.
	Title	Two-state expansion and collapse of a polypeptide			Type	Journal Article
	Year	2000	Publication	Journal of Molecular Biology	Abbreviated Journal	J Mol Biol
	Volume	301	Issue	4	Pages	1019-1027
	Keywords	Animals; Computer Simulation; Cytochrome c Group/chemistry/metabolism; Horses; Kinetics; Lasers; Models, Chemical; Peptides/chemistry/metabolism; Protein Conformation; Protein Denaturation; *Protein Folding; Spectrometry, Fluorescence; Temperature; Thermodynamics
	Abstract	The initial phase of folding for many proteins is presumed to be the collapse of the polypeptide chain from expanded to compact, but still denatured, conformations. Theory and simulations suggest that this collapse may be a two-state transition, characterized by barrier-crossing kinetics, while the collapse of homopolymers is continuous and multi-phasic. We have used a laser temperature-jump with fluorescence spectroscopy to measure the complete time-course of the collapse of denatured cytochrome c with nanosecond time resolution. We find the process to be exponential in time and thermally activated, with an apparent activation energy approximately 9 k(B)T (after correction for solvent viscosity). These results indicate that polypeptide collapse is kinetically a two-state transition. Because of the observed free energy barrier, the time scale of polypeptide collapse is dramatically slower than is predicted by Langevin models for homopolymer collapse.
	Address	Laboratory of Chemical Physics, NIDDK, National Institutes of Health, Building 5, Bethesda, MD, 20892-0520, USA
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language	English	Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0022-2836	ISBN		Medium
	Area		Expedition		Conference
	Notes	PMID:10966803			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	3790
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	Author	Harman, A.M.; Moore, S.; Hoskins, R.; Keller, P.
	Title	Horse vision and an explanation for the visual behaviour originally explained by the 'ramp retina'			Type	Journal Article
	Year	1999	Publication	Equine veterinary journal	Abbreviated Journal	Equine Vet J
	Volume	31	Issue	5	Pages	384-390
	Keywords	Animals; Behavior, Animal; Cell Count; Eye/anatomy & histology; Ganglia, Sensory/cytology; Horses/physiology; Refractive Errors/veterinary; Retina/cytology/physiology; Vision/physiology; Visual Acuity; Visual Fields
	Abstract	Here we provide confirmation that the 'ramp retina' of the horse, once thought to result in head rotating visual behaviour, does not exist. We found a 9% variation in axial length of the eye between the streak region and the dorsal periphery. However, the difference was in the opposite direction to that proposed for the 'ramp retina'. Furthermore, acuity in the narrow, intense visual streak in the inferior retina is 16.5 cycles per degree compared with 2.7 cycles per degree in the periphery. Therefore, it is improbable that the horse rotates its head to focus onto the peripheral retina. Rather, the horse rotates the nose up high to observe distant objects because binocular overlap is oriented down the nose, with a blind area directly in front of the forehead.
	Address	Department of Psychology, University of Western Australia, Nedlands, Australia
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language	English	Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0425-1644	ISBN		Medium
	Area		Expedition		Conference
	Notes	PMID:10505953			Approved	no
	Call Number	refbase @ user @			Serial	836
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	Author	Cooper, J.J.
	Title	Comparative learning theory and its application in the training of horses			Type	Journal Article
	Year	1998	Publication	Equine veterinary journal. Supplement	Abbreviated Journal	Equine Vet J Suppl
	Volume		Issue	27	Pages	39-43
	Keywords	Animals; Behavior, Animal; Conditioning (Psychology); Horses/psychology; *Learning; Reinforcement (Psychology)
	Abstract	Training can best be explained as a process that occurs through stimulus-response-reinforcement chains, whereby animals are conditioned to associate cues in their environment, with specific behavioural responses and their rewarding consequences. Research into learning in horses has concentrated on their powers of discrimination and on primary positive reinforcement schedules, where the correct response is paired with a desirable consequence such as food. In contrast, a number of other learning processes that are used in training have been widely studied in other species, but have received little scientific investigation in the horse. These include: negative reinforcement, where performance of the correct response is followed by removal of, or decrease in, intensity of a unpleasant stimulus; punishment, where an incorrect response is paired with an undesirable consequence, but without consistent prior warning; secondary conditioning, where a natural primary reinforcer such as food is closely associated with an arbitrary secondary reinforcer such as vocal praise; and variable or partial conditioning, where once the correct response has been learnt, reinforcement is presented according to an intermittent schedule to increase resistance to extinction outside of training.
	Address	Department of Zoology, University of Oxford, UK
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language	English	Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes	PMID:10485003			Approved	no
	Call Number	refbase @ user @			Serial	846
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	Author	Palme, R.
	Title	Non-invasive measurement of glucocorticoids: Advances and problems			Type	Journal Article
	Year	2019	Publication	Physiology & Behavior	Abbreviated Journal	Physiol. Behav.
	Volume	199	Issue		Pages	229-243
	Keywords	Glucocorticoids; Non-invasive; Faecal cortisol/corticosterone metabolites; Immunoassays; Physiological/biological validation
	Abstract	Glucocorticoids (GCs; i.e. cortisol/corticosterone) are a central component of the stress response and thus their measurement is frequently used to evaluate the impact of stressful situations. Their metabolites from faeces of various animal species are more and more taken as a non-invasive aid to assess GC release and thus adrenocortical activity. The current literature review includes an extensive collection (1327 papers) and evaluation (see also Supplementary Tables) of the literature on faecal cortisol/corticosterone metabolite (FCM) analysis published to date. It aims at giving reference for researchers interested in implementing FCM analysis into their study or seeking to improve such methods by providing background knowledge on GC metabolism and excretion, conveying insights into methodological issues and stating caveats of FCM analysis and by highlighting prerequisites for and some examples of a successful application of such methods. Collecting faecal samples and analysing FCMs may appear simple and straightforward, but researchers have to select and apply methods correctly. They also need to be aware of the many pitfalls and potentially confounding factors and, last but not least, have to carefully interpret results. Applied properly, measurement of FCMs is a powerful non-invasive tool in a variety of research areas, such as (stress) biology, ethology, ecology, animal conservation and welfare, but also biomedicine.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0031-9384	ISBN		Medium
	Area		Expedition		Conference
	Notes	Palme2019_attachment.pdf			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6517
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	Author	Drevemo, S.; Fredricson, I.; Hjertén, G.; McMIKEN, D.
	Title	Early development of gait asymmetries in trotting Standardbred colts			Type	Journal Article
	Year	1987	Publication	Equine Veterinary Journal	Abbreviated Journal	Equine. Vet. J.
	Volume	19	Issue	3	Pages	189-191
	Keywords
	Abstract	Summary Ten trotting Standardbred colts were recorded by high-speed cinematography at the ages of eight, 12 and 18 months. The horses were trotting on a treadmill operating at 4.0 m/secs. Five horses were subjected to a programme of intensified training from eight months of age, whereas the others were not trained and acted as controls. The films were analysed on a semi-automatic film-reading equipment and a number of variables used to demonstrate the gait symmetry were calculated and scaled by computer. Certain differences between left and right diagonal and contralateral pair of limbs, respectively, were noted, suggesting that laterality in horses may be inherited. The most pronounced systematic differences were found in 18-month old horses in the trained group. The results show the importance of careful gait examination and comprehensive coordination training at an early age.
	Address
	Corporate Author				Thesis
	Publisher	American Medical Association (AMA)	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0425-1644	ISBN		Medium
	Area		Expedition		Conference
	Notes	https://doi.org/10.1111/j.2042-3306.1987.tb01373.x			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6702
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	Author	Dyson, S.
	Title	The Ridden Horse Pain Ethogram			Type	Journal Article
	Year	2022	Publication	Equine Veterinary Education	Abbreviated Journal	Equine Vet Educ
	Volume	34	Issue	7	Pages	372-380
	Keywords	horse; lameness; canter; behaviour; saddle-fit; rider skill
	Abstract	Summary The Ridden Horse Pain Ethogram (RHpE) comprises 24 behaviours, the majority of which are at least 10 times more likely to be seen in lame horses compared with non-lame horses. The observation of >=8/24 behaviours is likely to reflect the presence of musculoskeletal pain, although some lame horses score <8/24 behaviours. A marked reduction in RHpE scores after resolution of lameness using diagnostic anaesthesia proves a causal relationship between pain and RHpE scores. Horses should be assessed for approximately 10?min in walk, trot (including 10?m diameter circles), canter and transitions. The validity of the RHpE has been verified for use in horses which perform dressage-type movements, and which have been trained to work with the front of the head in a vertical position. It has not, as yet, been used in horses while jumping, racehorses, western performance or endurance horses. The RHpE provides a valuable tool for riders, trainers, veterinarians and other equine professionals to recognise the presence of musculoskeletal pain, even if overt lameness cannot be recognised. Riders with a higher skill-level may improve gait quality, but cannot obscure behavioural signs of pain, although specific behaviours may change. Tight saddle tree points, the rider sitting on the caudal third of the saddle and rider weight may influence RHpE scores. Accurate application of the RHpE requires training and practice. The RHpE is a powerful tool for the assessment of ridden horses and the identification of likely musculoskeletal pain. Such pain merits further investigation and treatment, to improve equine welfare and performance. The RHpE provides an additional means of evaluating the response to diagnostic anaesthesia. It provides a mechanism for client education and a diplomatic way of communicating with clients about equine discomfort related to saddle-fit, rider size, their position in the saddle and ability to ride in balance.
	Address
	Corporate Author				Thesis
	Publisher	American Medical Association (AMA)	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0957-7734	ISBN		Medium
	Area		Expedition		Conference
	Notes	https://doi.org/10.1111/eve.13468			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6693
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	Author	Gleerup, K.B.; Lindegaard, C.
	Title	Recognition and quantification of pain in horses: A tutorial review			Type	Journal Article
	Year	2016	Publication	Equine Veterinary Education	Abbreviated Journal	Equine Vet Educ
	Volume	28	Issue	1	Pages	47-57
	Keywords	horse; pain evaluation; pain scale; pain behaviour; pain face
	Abstract	Summary Pain management is dependent on the quality of the pain evaluation. Ideally, pain evaluation is objective, pain-specific and easily incorporated into a busy equine clinic. This paper reviews the existing knowledge base regarding the identification and quantification of pain in horses. Behavioural indicators of pain in horses in the context of normal equine behaviour, as well as various physiological parameters potentially useful for pain evaluation, are discussed. Areas where knowledge is sparse are identified and a new equine pain scale based on results from all reviewed papers is proposed. Finally, the most important considerations in relation to the implementation of a pain scale in a hospital setting are discussed.
	Address
	Corporate Author				Thesis
	Publisher	American Medical Association (AMA)	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0957-7734	ISBN		Medium
	Area		Expedition		Conference
	Notes	https://doi.org/10.1111/eve.12383			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6705
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	Author	Reinhardt, I.; Kluth, G.; Nowak, C.; Szentiks, C.A.; Krone, O.; Ansorge, H.; Mueller, T.
	Title	Military training areas facilitate the recolonization of wolves in Germany			Type	Journal Article
	Year	2019	Publication	Conservation Letters	Abbreviated Journal	Conservation Letters
	Volume	12	Issue	3	Pages	e12635
	Keywords	Canis lupus; large carnivores; population growth; protected areas; recolonization
	Abstract	Abstract Wolves (Canis lupus) are currently showing a remarkable comeback in the highly fragmented cultural landscapes of Germany. We here show that wolf numbers increased exponentially between 2000 and 2015 with an annual increase of about 36%. We demonstrate that the first territories in each newly colonized region were established over long distances from the nearest known reproducing pack on active military training areas (MTAs). We show that MTAs, rather than protected areas, served as stepping-stones for the recolonization of Germany facilitating subsequent spreading of wolf territories in the surrounding landscape. We did not find any significant difference between MTAs and protected areas with regard to habitat. One possible reason for the importance of MTAs may be their lower anthropogenic mortality rates compared to protected and other areas. To our knowledge, this is the first documented case where MTAs facilitate the recolonization of an endangered species across large areas.
	Address
	Corporate Author				Thesis
	Publisher	John Wiley & Sons, Ltd	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1755-263x	ISBN		Medium
	Area		Expedition		Conference
	Notes	https://doi.org/10.1111/conl.12635			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6676
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	Author	López-Bao, J.V.; Sazatornil, V.; Llaneza, L.; Rodríguez, A.
	Title	Indirect Effects on Heathland Conservation and Wolf Persistence of Contradictory Policies that Threaten Traditional Free-Ranging Horse Husbandry			Type	Journal Article
	Year	2013	Publication	Conservation Letters	Abbreviated Journal	Conservation Letters
	Volume	6	Issue	6	Pages	448-455
	Keywords	Farmland biodiversity; heathlands; integration of environmental policies; management of livestock carcasses; traditional land uses; wolf conservation
	Abstract	Abstract Conservation agencies within the European Union promote the restoration of traditional land uses as a cost-effective way to preserve biodiversity outside reserves. Although the European Union pursues the integration of the environment into strategic decision-making, it also dictates sectoral policies that may damage farmland biodiversity. We illustrate this point by outlining the socioeconomic factors that allow the persistence of traditional free-ranging horse husbandry in Galicia, northwestern Spain. Free-ranging Galician mountain ponies provide ecological and socioeconomic services including the prevention of forest fires, the maintenance of heathlands and wolves, and the attenuation of wolf-human conflicts. This traditional livestock system may have persisted because it entails negligible costs for farmers. Wolf predation upon Galician mountain ponies does not threaten farmer's economies and seems to be tolerated better than attacks to more valuable stock. Recently, European Union's regulations on animal welfare, carcass management, or meat production put new economic and administrative burdens on farmers, make free-ranging horse rearing economically unsustainable, and incentivize its abandonment. The aim of the European Union to integrate environmental policies may be successful to preserve farmland biodiversity only through careful anticipation of the side effects of apparently unrelated regulations on the fragile equilibrium that sustain traditional land uses.
	Address
	Corporate Author				Thesis
	Publisher	John Wiley & Sons, Ltd	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1755-263x	ISBN		Medium
	Area		Expedition		Conference
	Notes	https://doi.org/10.1111/conl.12014			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6685
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	Author	Burton, A.C.; Neilson, E.; Moreira, D.; Ladle, A.; Steenweg, R.; Fisher, J.T.; Bayne, E.; Boutin, S.
	Title	REVIEW: Wildlife camera trapping: a review and recommendations for linking surveys to ecological processes			Type	Journal Article
	Year	2015	Publication	Journal of Applied Ecology	Abbreviated Journal	J Appl Ecol
	Volume	52	Issue	3	Pages	675-685
	Keywords	animal movement; camera trap; capture-recapture; density estimation; imperfect detection; mammal monitoring; occupancy model; relative abundance; sampling error; wildlife survey methodology
	Abstract	Summary Reliable assessment of animal populations is a long-standing challenge in wildlife ecology. Technological advances have led to widespread adoption of camera traps (CTs) to survey wildlife distribution, abundance and behaviour. As for any wildlife survey method, camera trapping must contend with sources of sampling error such as imperfect detection. Early applications focused on density estimation of naturally marked species, but there is growing interest in broad-scale CT surveys of unmarked populations and communities. Nevertheless, inferences based on detection indices are controversial, and the suitability of alternatives such as occupancy estimation is debatable. We reviewed 266 CT studies published between 2008 and 2013. We recorded study objectives and methodologies, evaluating the consistency of CT protocols and sampling designs, the extent to which CT surveys considered sampling error, and the linkages between analytical assumptions and species ecology. Nearly two-thirds of studies surveyed more than one species, and a majority used response variables that ignored imperfect detection (e.g. presence?absence, relative abundance). Many studies used opportunistic sampling and did not explicitly report details of sampling design and camera deployment that could affect conclusions. Most studies estimating density used capture?recapture methods on marked species, with spatially explicit methods becoming more prominent. Few studies estimated density for unmarked species, focusing instead on occupancy modelling or measures of relative abundance. While occupancy studies estimated detectability, most did not explicitly define key components of the modelling framework (e.g. a site) or discuss potential violations of model assumptions (e.g. site closure). Studies using relative abundance relied on assumptions of equal detectability, and most did not explicitly define expected relationships between measured responses and underlying ecological processes (e.g. animal abundance and movement). Synthesis and applications. The rapid adoption of camera traps represents an exciting transition in wildlife survey methodology. We remain optimistic about the technology's promise, but call for more explicit consideration of underlying processes of animal abundance, movement and detection by cameras, including more thorough reporting of methodological details and assumptions. Such transparency will facilitate efforts to evaluate and improve the reliability of camera trap surveys, ultimately leading to stronger inferences and helping to meet modern needs for effective ecological inquiry and biodiversity monitoring.
	Address
	Corporate Author				Thesis
	Publisher	John Wiley & Sons, Ltd	Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0021-8901	ISBN		Medium
	Area		Expedition		Conference
	Notes	https://doi.org/10.1111/1365-2664.12432			Approved	no
	Call Number	Equine Behaviour @ team @			Serial	6703
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